Bertrand J J - OmicsDI

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Unknown (821)
Proteomics (52)
Transcriptomics (34)
Genomics (23)
Metabolomics (13)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (67)
Mus musculus (12)
Rattus norvegicus (3)
Tetronarce californica (2)
Pseudomonas aeruginosa (2)
Bos taurus (2)
Escherichia coli (2)
Branchiostoma lanceolatum (1)
Euglena gracilis (1)
Ovis aries (1)
Triticum aestivum (1)
Coriolopsis gallica (1)
Cupriavidus necator H16 (1)
Drosophila melanogaster (1)
Pelagomonas calceolata (1)
Pseudomonas fluorescens PF5 (1)
Staphylococcus aureus (1)
Trifolium pratense subsp. pratense (1)
Trypanosoma brucei (1)
environmental samples (1)
environmental samples (1)

Repository

pride (40)
biostudies-arrayexpress (36)
EGA (21)
MassIVE (10)
MetaboLights (10)
GNPS (3)
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Disease

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Technology Type

Mass Spectrometry (40)
Shotgun proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (14)
Mass spectrometry (7)
Bottom-up proteomics (4)
Gel-based experiment (4)
NMR spectroscopy (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Illumina HiSeq 2000 (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Q Exactive (6)
Nuclear Magnetic Resonance (NMR) - (3)
TripleTOF 6600 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
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Liquid Chromatography MS - negative - reverse phase (2)
Qiagen MinElute (1)
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Illumina HiSeq 1500 (1)
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6550 iFunnel Q-TOF LC/MS (1)
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Diode array detection MS - - reverse phase (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
LTQ XL (Thermo Scientific) (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2013 (12)
2020 (10)
2023 (10)
2024 (9)
2019 (9)
2021 (7)
2017 (6)
2015 (6)
2016 (5)
2018 (4)
2025 (4)
2026 (4)
2022 (4)
2012 (3)
2011 (3)
2010 (2)
2007 (2)
2014 (1)
2008 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:15741 (5)
CHEBI:30915 (5)
CHEBI:15756 (4)
CHEBI:18012 (4)
CHEBI:18186 (4)
CHEBI:22660 (4)
CHEBI:24898 (4)
CHEBI:28044 (4)
CHEBI:30769 (4)
CHEBI:15891 (3)
CHEBI:15940 (3)
CHEBI:16002 (3)
CHEBI:16335 (3)
CHEBI:16551 (3)
CHEBI:16704 (3)
CHEBI:16811 (3)
CHEBI:16977 (3)
CHEBI:17268 (3)
CHEBI:17376 (3)
CHEBI:17505 (3)
CHEBI:17754 (3)
CHEBI:17775 (3)
CHEBI:17822 (3)
CHEBI:18237 (3)
CHEBI:18257 (3)
CHEBI:22653 (3)
CHEBI:24149 (3)
CHEBI:24266 (3)
CHEBI:15355 (1)

Metabolite Name

ADP (2)
Adenosine (2)
Aspartate (2)
Citrate (2)
Creatine (2)
Creatinine (2)
Glucose (2)
Glycerol (2)
Histidine (2)
IMP (2)
L-Alanine (2)
Lactate (2)
Methionine (2)
Proline (2)
Succinate (2)
Sucrose (2)
Taurine (2)
Uridine (2)
(+)-Camphor (1)
(+)-beta-Selinene (1)
(7Z,10Z)-hexadecadienoylcarnitine (1)
(9Z,12Z)-3-hydroxyhexadecadienoylcarnitine (1)
(S)-(-)-Citronellic acid, methyl ester (1)
1(10),11-Eremophiladien-9-ol (1)
1,11-Undecanedicarboxylic acid (1)
1,3,8-trihydroxy-4-methyl-2,7-diprenylxanthone (1)
1,3-propanediol (1)
1,4-Benzenedipropanol, alpha,alpha',gamma,gamma,gamma',gamma'-hexamethyl- (1)
1,5-anhydro-D-sorbitol (1)
1,6-anhydro-glucose (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (26)
ChIP-seq (2)
RNA-seq of coding RNA (2)
GRO-seq (1)
Human - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (108)
2024 (95)
2022 (94)
2023 (72)
2025 (68)
2020 (63)
2016 (48)
2018 (46)
2015 (45)
2017 (40)
2019 (39)
2013 (30)
2014 (28)
2012 (22)
2026 (16)
2011 (12)
2010 (9)
2007 (6)
2008 (5)
2009 (4)
2005 (3)
2006 (2)
2004 (2)

Lab affiliation

IGMM, CNRS, Univ Montpellier, Montpellier, France (5)
UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (4)
Associate Professor Biology, Dalhousie University (1)
Baylor College of Medicine Houston, Texas (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Cambridge Centre for Proteomics, Cambridge Systems Biology Centre, Department of Biochemistry, University of Cambridge, Cambridge CB2 1QR, U.K. (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona (BIST), Barcelona, Spain. Universitat Pompeu Fabra (UPF), Barcelona, Spain. (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (1)
Hepato-gastroenterology and digestive oncology unit, university Hopsital of Liège and Laboratory of translational gastroenterology GIGA-Research, University of Liège (1)
IPHC, LSMBO, CNRS (1)
Institut Mondor de Recherche Biomédicale, INSERM, U955, 94010 Créteil, France Université Paris Est Créteil, 94010, Créteil, France (1)
Institut National des Sciences et Techniques de la Mer Conservatoire National des Arts et Métiers BP324 50103 Cherbourg-Octeville Cedex France (1)
Institut de Genetique et de Biologie Moleculaire et cellulaire (IGBMC), Centre National de Recherche scientifique (CNRS) UMR 7104 - Institut National de santé et de Recherche Médicale (Inserm) U964 - Université de Strasbourg, 1 rue Laurent Fries, Illkirch, France (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Bellinzona, Switzerland. (1)
Institute of Molecular Genetics of the Czech Academy of Sciences (1)
Institute of pharmacology and stuctural biology, CNRS, Toulouse France (1)
James McGill Professor of Neurology and Neurosurgery and Anatomy and Cell Biology Montreal Neurological Institute-Hospital McGill, Montreal CANADA (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), University of Strasbourg, CNRS, IPHC, UMR 7178, F-67000 Strasbourg, France (1)
Luxembourg Institute of Science and Technology “Environmental Research and Innovation” (ERIN) department 41, rue du Brill, L-4422 Belvaux LUXEMBOURG Tel +tel: +352 275 888- 860 Fax +352 275 885 (1)
Marine Chemistry Geochemistry, Woods Hole Oceanographic Institution, US (1)
Marseille Proteomique, Inserm U1068, CNRS UMR7258, Aix Marseille Université U105 (1)
Paris Cardiovascular Research Center (PARCC); INSERM UMR970; Université Paris Descartes; Paris, France (1)
Plateforme d’Imageries du Vivant, Université Paris Cité, PARCC, INSERM, F-75006 Paris, France (1)
Pole of cardiovascular research - Institute of Experimental and Clinical Research (IREC) Université catholique de Louvain Brussels, Belgium (1)
Professor Biology, Dalhousie University (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
UMR 1048-I2MC, Inserm, Université de Toulouse, UPS, Toulouse, France (1)
UMR INSERM 1094 Neuroépidémiologie Tropicale Institut d'Epidémiologie Neurologique et de Neurologie Tropicale Faculté de Pharmacie 2, rue du Dr Marcland 87025 Limoges FRANCE (1)
UMR9002 CNRS-UM Institute of Human Genetics (1)

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Terminal deoxynucleotidyl transferase requires KU80 and XRCC4 to promote N-addition at non-V(D)J chromosomal breaks in non-lymphoid cells.

Not available

S-EPMC3458542 | biostudies-literature

Dynamic complexity of Stackelberg-Bertrand game with one-way R&D spillovers, effective information and government subsidies.

Not available

S-EPMC12303324 | biostudies-literature

Online Headspace-Solid Phase Microextraction-Gas Chromatography-Mass Spectrometry-based untargeted volatile metabolomics for studying emerging complex biopesticides: A proof of concept

This work introduces a novel online Headspace-Solid Phase Microextraction-Gas Chromatography-Mass Spectrometry-based untargeted metabolomics approach, suggested as an alternative tool to study the environmental fate of volatile xenometabolites in emerging complex biopesticides, e.g. the Myrica gale ...

2021-01-26 | MTBLS2026 | MetaboLights

LC-HRMS Metabolomics for Untargeted Diagnostic Screening in Clinical Laboratories: A Feasibility Study

Today's high-resolution mass spectrometers (HRMS) allow bioanalysts to perform untargeted/global determinations that can reveal unexpected compounds or concentrations in a patient’s sample. This could be performed for preliminary diagnosis attempts when usual diagnostic processes and targeted ...

2019-06-06 | MTBLS476 | MetaboLights

Gut microbiota modulation by jabuticaba peel and its effect on glucose metabolism via inflammatory signaling.

Not available

S-EPMC8850559 | biostudies-literature

SYBR®Green qPCR Salmonella detection system allowing discrimination at the genus, species and subspecies levels.

Not available

S-EPMC3825158 | biostudies-literature

Parkinson risk in idiopathic REM sleep behavior disorder: preparing for neuroprotective trials.

Not available

S-EPMC4371408 | biostudies-literature

Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton.

Not available

S-EPMC3476827 | biostudies-literature

HNF1-alpha inactivation promotes lipogenesis in human hepatocellular adenoma independently of SREBP1 & ChREBP activation

Biallelic inactivating mutations of the transcription factor 1 gene (TCF1), encoding hepatocyte nuclear factor 1a (HNF1a), were identified in 50% of hepatocellular adenomas (HCA) phenotypically characterized by a striking steatosis. To understand the molecular basis of this aberrant lipid storage, w...

ORGANISM(S): Homo sapiens

2007-05-01 | E-GEOD-7473 | biostudies-arrayexpress

Dataset of protein changes induced by cold acclimation in red clover (Trifolium pratense L.) populations recurrently selected for improved freezing tolerance.

Not available

S-EPMC4927546 | biostudies-literature

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