Biomass assessment

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Unknown (882)
Genomics (81)
Transcriptomics (29)
Metabolomics (14)
Proteomics (14)
Other (2)
Models (1)

Organisms

Homo sapiens (4)
Caenorhabditis elegans (4)
Zea mays (2)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
Methylocystis sp. SB2 (2)
Schizophyllum commune (2)
Folsomia candida (2)
Neurospora crassa (2)
1,4-dioxane-degrading enrichment culture (2)
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Phlebia radiata (1)
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Organisms

subsurface metagenome (7)
1,4-dioxane-degrading enrichment culture (2)
Homo sapiens (2)
sulfo-oxidizing enrichment culture (1)
Eucalyptus urophylla (1)
Methylocystis sp. SB2 (1)
Rhizobium sp. (1)
Populus tremula x Populus alba (1)
Folsomia candida (1)
sand metagenome (1)
Caenorhabditis elegans (1)
marine metagenome (1)
metagenome (1)
Oryza sativa Japonica Group (1)
soil metagenome (1)
bioreactor metagenome (1)

Repository

ENA (80)
biostudies-arrayexpress (22)
MetaboLights (14)
pride (14)
geo (10)
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Tissue

Fungal cell (1)
Feces (1)
Whole body (1)
Photosynthetic cell (1)
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Disease

Bacterial infectious disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (14)
Mass spectrometry (13)
Shotgun proteomics (6)
Bottom-up proteomics (5)
SWATH MS (2)
Data-dependent acquisition (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (5)
Exactive (Thermo Scientific) (2)
Liquid Chromatography MS - alternating - hilic (2)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
GC-TOF-MS (1)
HPLC-LTQ-MS (1)
Diode array detection MS - - reverse phase (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Direct infusion MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2010 (9)
2026 (9)
2020 (4)
2018 (4)
2016 (4)
2014 (4)
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2017 (4)
2011 (3)
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2013 (2)
2009 (2)
2024 (2)
2022 (2)
2005 (1)
2015 (1)
2012 (1)
2021 (1)
2019 (1)

CHEBI ID

CHEBI:28300 (6)
CHEBI:28044 (6)
CHEBI:25094 (5)
CHEBI:22660 (5)
CHEBI:25017 (5)
CHEBI:17754 (5)
CHEBI:27266 (5)
CHEBI:17964 (5)
CHEBI:27897 (5)
CHEBI:17191 (5)
CHEBI:30769 (5)
CHEBI:17992 (4)
CHEBI:17822 (4)
CHEBI:26271 (4)
CHEBI:18186 (4)
CHEBI:26986 (4)
CHEBI:16811 (4)
CHEBI:18257 (4)
CHEBI:15760 (4)
CHEBI:28842 (4)
CHEBI:17148 (4)
CHEBI:15741 (4)
CHEBI:16865 (4)
CHEBI:16196 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:16010 (4)
CHEBI:16449 (4)
CHEBI:17053 (4)
CHEBI:15603 (4)

Metabolite Name

N,O-Bis-(trimethylsilyl)-2-pyrrolidone carboxylic acid (3)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester (3)
Alpha-D-Mannopyranose, 1,2,3,4,6-pentakis-O-(trimethylsilyl)- (3)
Silanamine, N-[2-[3,4-bis[(trimethylsilyl)oxy]phenyl]ethyl]-1,1,1-trimethyl-N-(trimethylsilyl)- (3)
L-Aspartic acid, N-(trimethylsilyl)-, bis(trimethylsilyl) ester (3)
Butanoic acid, 2,4-bis[(trimethylsilyl)oxy]-, trimethylsilyl ester (3)
L-Isoleucine, N-(trimethylsilyl)-, trimethylsilyl ester (3)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]- (3)
Pyridine, 3-trimethylsiloxy- (3)
Trimethylsilyl ether of glycerol (3)
Phosphoric acid, bis(trimethylsilyl) 2,3-bis[(trimethylsilyl)oxy]propyl ester (3)
Pentadecane (3)
Hexadecanoic acid (3)
Ornithine (3)
Methionine (3)
Lysine (3)
Tyrosine (3)
Serine (3)
Adenosine (3)
Alanine (3)
Threonine (3)
Proline (3)
Phenylalanine (3)
Octadecanoic acid (3)
Glutamine (3)
Adenine (3)
Sucrose (3)
Tryptophan (3)
Myo-Inositol, 1,2,3,4,5,6-hexakis-O-(trimethylsilyl)- (2)
Eicosane, 2-methyl- (2)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2026 (14)
2025 (10)
2022 (8)
2021 (8)
2023 (7)
2015 (7)
2024 (6)
2020 (5)
2014 (5)
2018 (4)
2019 (3)
2016 (2)
2017 (1)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (3)
Comparative genomic hybridization by array (2)
Transcription profiling by SAGE (1)
Other (1)

Release Date

2025 (131)
2022 (117)
2023 (116)
2021 (88)
2024 (87)
2020 (73)
2019 (56)
2018 (51)
2017 (40)
2016 (36)
2014 (30)
2015 (25)
2013 (13)
2010 (11)
2012 (8)
2026 (8)
2011 (6)
2007 (2)
2009 (1)
2008 (1)
2006 (1)
2004 (1)
2003 (1)
1998 (1)

Lab affiliation

INEPCP FRCCP RAS, Moscow, Russia (4)
Department of Geoscience, University of Calgary (2)
Associate Professor, Molecular and Cellular Biology Department, University of Arizona (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Westphalian Wilhelms-University Münster Institute for Biology and Biotechnology of Plants Green Biotechnology Schlossplatz 8 48143 Münster (1)
Department of Biomedical Sciences, University of Sassari, Italy (1)
North Carolina State University, NC, USA (1)
Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, the Netherlands (1)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)

Tags

xref:PubMed:28984418 (2)
xref:PubMed:38245732 (1)
xref:PubMed:29079861 (1)
xref:PubMed:35149015 (1)
xref:PubMed:20331876 (1)

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Transcriptional profiling of human bronchial epithelial cell BEAS-2B exposed to diesel and biomass ultrafine particles

Time course transcriptomic profiling of human bronchial epithelial cell BEAS-2B exposed to a single dose of diesel and biomass ultrafine particles

ORGANISM(S): Homo sapiens

2018-05-09 | E-MTAB-5157 | biostudies-arrayexpress

Phylogenetic, microbiological and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor

Phylogenetic, microbiological and comparative genomic analysis was used to examine the diversity among members of the genus Caldicellulosiruptor with an eye towards the capacity of these extremely thermophilic bacteria for degrading the complex carbohydrate content of plant biomass. Seven species fr...

ORGANISM(S): Caldicellulosiruptor lactoaceticus

2010-11-29 | E-GEOD-23606 | biostudies-arrayexpress

Extension of biomass estimates to pre-assessment periods using density dependent surplus production approach.

Not available

S-EPMC5683571 | biostudies-literature

An assessment of forest biomass maps in Europe using harmonized national statistics and inventory plots.

Not available

S-EPMC5806600 | biostudies-literature

Seasonal dynamics of the macrophyte test species Myriophyllum spicatum over two years in experimental ditches for population modeling application in risk assessment.

Not available

S-EPMC9545951 | biostudies-literature

Optimization of heterotrophic cultivation of Chlorella sp. HS2 using screening, statistical assessment, and validation.

Not available

S-EPMC6920485 | biostudies-literature

Fossil-Free Polyethylene and Polypropylene Production via CCU and Biomass Pathways: A Harmonized Techno-Economic Assessment.

Not available

S-EPMC12854507 | biostudies-literature

Life cycle environmental sustainability and cumulative energy assessment of biomass pellets biofuel derived from agroforest residues.

Not available

S-EPMC9543634 | biostudies-literature

Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans: fluoranthene

Physiologically based modelling using DEBtox (dynamic energy budget in toxicology) and transcriptional profiling were used in Caenorhabditis elegans to identify how physiological modes of action, as indicated by effects on system level resource allocation were associated with changes in gene express...

ORGANISM(S): Caenorhabditis elegans

2010-05-05 | E-GEOD-21011 | biostudies-arrayexpress

Estimates of forest biomass carbon storage inLiaoning Province of Northeast China: a review and assessment.

Not available

S-EPMC3934887 | biostudies-literature

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