Blastocyst - OmicsDI

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Organisms

Mus musculus (407)
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Sus scrofa (40)
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Macaca fascicularis (6)
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unidentified (2)
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Mus musculus x Rattus norvegicus (1)

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Tissue

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Blastocyst (1)
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Disease

Disease free (3)
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Technology Type

Mass Spectrometry (42)
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DiaPASEF (4)
Mass spectrometry assay (3)
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All-ion fragmentation (2)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Proteogenomics (1)
Affinity proteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (24)
Illumina HiSeq 4000 (22)
NextSeq 500 (20)
Illumina HiSeq 2500 (17)
Illumina NovaSeq 6000 (13)
NextSeq 2000 (5)
Illumina NovaSeq X (3)
Illumina HiSeq 1000 (3)
Agilent 2100 Bioanalyzer (Agilent Technologies); Qubit Fluorometer (Thermo Fisher Scientific); standard electrophoresis system (2)
NanoDrop spectrophotometer, Agilent 2100 Bioanalyzer (2)
Illumina Genome Analyzer IIx (2)
None (2)
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10x 3’ single-cell mRNA v3 kit (10x Genomics) (1)
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Computer (1)
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Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
GenePix 4000A [Axon Instruments] (1)
Axon- GenePix4000B (1)
Ion Torrent PGM (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)

Publication Date

2025 (122)
2016 (97)
2024 (93)
2021 (93)
2010 (93)
2013 (89)
2014 (86)
2015 (85)
2023 (82)
2022 (79)
2011 (79)
2012 (69)
2026 (60)
2019 (55)
2020 (55)
2018 (41)
2008 (40)
2017 (32)
2009 (32)
2007 (15)
2006 (8)
2005 (7)
2004 (7)

UNIPROT ID/AC

89462.XP_006076105.1 (1)
89462.XP_006052156.1 (1)
89462.XP_006057680.1 (1)
89462.XP_006063865.1 (1)
89462.XP_006078633.1 (1)
89462.XP_006052254.1 (1)
89462.XP_006070033.1 (1)
89462.XP_006065187.1 (1)
89462.XP_006056554.1 (1)
89462.XP_006074795.1 (1)
89462.XP_006066896.1 (1)
89462.XP_006076861.1 (1)
89462.XP_006076510.1 (1)
89462.XP_006054991.1 (1)
89462.XP_006069550.1 (1)
89462.XP_006049728.1 (1)
89462.XP_006074662.1 (1)
89462.XP_006040723.1 (1)
89462.XP_006060910.1 (1)
89462.XP_006051907.1 (1)
89462.XP_006060033.1 (1)
89462.XP_006077671.1 (1)
89462.XP_006070188.1 (1)
89462.XP_006070407.1 (1)
89462.XP_006043184.1 (1)
89462.XP_006050989.1 (1)
89462.XP_006043963.1 (1)
89462.XP_006076785.1 (1)
89462.XP_006069794.1 (1)
89462.XP_006067177.1 (1)

CHEBI ID

CHEBI:25017 (3)
CHEBI:27781 (2)
CHEBI:42504 (2)
CHEBI:32365 (2)
CHEBI:26271 (2)
CHEBI:18237 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:24898 (2)
CHEBI:15428 (2)
CHEBI:28044 (2)
CHEBI:17154 (2)
CHEBI:16196 (2)
CHEBI:28661 (2)
CHEBI:27266 (2)
CHEBI:18347 (2)
CHEBI:16449 (2)
CHEBI:17053 (2)
CHEBI:18012 (2)
CHEBI:32816 (2)
CHEBI:17351 (2)
CHEBI:30769 (2)
CHEBI:20067 (2)
CHEBI:72770 (1)
CHEBI:149654 (1)
CHEBI:61159 (1)
CHEBI:149653 (1)
CHEBI:149652 (1)
CHEBI:170067 (1)
CHEBI:615597 (1)

Metabolite Name

Histidine (4)
Phenylalanine (4)
Leucine (3)
Uracil (3)
Allantoin (3)
L-Histidine (3)
Taurine (3)
Alanine (3)
Cytidine (3)
Creatinine (3)
Creatine (3)
L-Valine (3)
All-trans-4-hydroxyretinoic acid (2)
N-acetyl-l-tyrosine (2)
2'-Deoxy-D-ribose (2)
3-hydroxyisovaleric acid (2)
Ciprofloxacin (2)
Melezitose (2)
5-L-Glutamyl-L-alanine (2)
N-acetylhistidine (2)
Ethylenediaminetetraacetic acid (2)
1,2-benzenedicarboxylic acid (2)
2-Oxovaleric acid (2)
Anserine (2)
D-erythro-sphingosine-1-phosphate (2)
Melamine (2)
L-Norleucine (2)
L-hydroxyarginine (2)
L-citrulline (2)
Glycodeoxycholic acid (2)

First Public Date

2014 (127)
2025 (123)
2024 (115)
2023 (97)
2022 (97)
2021 (97)
2026 (67)
2020 (63)
2019 (58)
2018 (34)
2017 (31)
2016 (30)
2015 (29)
2013 (19)

Study type

Transcription profiling by array (360)
RNA-seq of coding RNA (97)
ChIP-seq (47)
RNA-seq of coding RNA from single cells (26)
Methylation profiling by high throughput sequencing (24)
RNA-seq of non coding RNA (14)
Methylation profiling by array (7)
Unknown experiment type (6)
Comparative genomic hybridization by array (6)
RNA-seq of total RNA (6)
ChIP-chip by tiling array (5)
ATAC-seq (5)
Cell line - High-throughput sequencing (4)
Genotyping by array (3)
MicroRNA profiling by array (3)
Transcription profiling by SAGE (2)
Animal - Single-cell sequencing (2)
Trajectory (2)
ChIP-chip by array (2)
Bisulfite-seq (2)
Other (2)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Hi-C (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (281)
2021 (265)
2023 (259)
2025 (232)
2024 (200)
2020 (186)
2016 (168)
2015 (160)
2014 (151)
2019 (138)
2018 (131)
2017 (130)
2013 (130)
2010 (114)
2012 (101)
2011 (96)
2009 (47)
2008 (44)
2026 (33)
2007 (27)
2005 (15)
2006 (10)
2004 (9)
2003 (3)
2000 (2)
1999 (2)
2002 (1)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

Research Group Leader Bulut-Karslioglu lab Dept. of Genome Regulation Max Planck Institute for Molecular Genetics Ihnestrasse 63-73 14195 Berlin GERMANY (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Curators’ Distinguished Professor of Animal Sciences and Obstetrics, Gynecology and Women’s Health, University of Missouri, Columbia (1)
Max Planck Institute for Molecular Bioemedicine, Bioanalytical Mass Spectroemtry (1)
Gamete Research Centre, Department of Veterinary Sciences, University of Antwerp, 2610 Wilrijk, Belgium. (1)
Department of Animal Sciences, Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University, Rehovot 76100, Israel Center of Excellence in Agriculture and Environmental Health, the Hebrew University, Rehovot 76100, Israel (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproductive Medicine, Institute of Women, the Second Hospital, Children and Reproductive Health, Shandong University (1)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria (1)
UMS Biosit - CNRS 3480 - Inserm 018 Campus de Beaulieu - Bâtiment. 24 - CS2407 263 Avenue du Général Leclerc 35042 RENNES CEDEX FRANCE (1)
Proteomics Technology Hub, IMP, Vienna, Austria (1)
Università degli Studi di Milano (1)
VIB Center for Medical Biotechnology, Zwijnaarde, Belgium and Department of Biomolecular Medicine, Ghent University, Ghent, Belgium (1)
shandong university (1)
Research Institute of Molecular Pathology (IMP), Vienna-Bio-Center (VBC), Vienna, Austria (1)
University of Wisconsin-Madison, Cellular and Regenerative Medicine (1)
University of Padova (1)
Analytical Chemistry Core Lab (ACL) – Proteomics Unit Building 2 east, Level 2, 2281-WS05 King Abdullah University of Science and Technology (KAUST) Thuwal, 23955-6900, Kingdom of Saudi Arabia (1)
University of Padua (1)
Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, China (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (1)
Friedrich-Loeffler-Institute (1)
Cell Fate Engineering and Therapeutics Lab, Institute of Molecular and Cell Biology (IMCB), Agency for Science, Technology and Research (A*STAR), 61 Biopolis Drive, Proteos, Singapore 138673, Republic of Singapore (1)
Max Planck Institute for Molecular Biomedicine Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine (1)
Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (1)
Clinic of Reproductive Medicine, Department of Farm Animals Vetsuisse-Faculty University Zurich (1)
The Third Affiliated Hospital of Guangzhou Medical University, Peking University Third Hospital. (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresource, Animal Reproduction Institute, Guangxi University, Nanning, Guangxi 530004, China (1)
Radboud Universiteit Nijmegen (1)
Nuffield Department of Obstetrics and Gynaecology, University of Oxford, Institute of Reproductive Sciences, Oxford, OX4 2HW, UK (1)

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Metabolomic signatures in blastocyst spent culture medium as noninvasive predictors of live birth: a pilot study

Research Question: Can metabolomic profiling of blastocyst spent culture medium (SCM) serve as a non-invasive tool to predict live birth?

Design: This pilot study investigated the association between metabolite profiles in SCM and clinical outcomes following single blastocyst transfer. Seve...

2026-02-13 | MTBLS13898 | MetaboLights

The growth factor environment defines distinct pluripotent ground states in novel blastocyst derived stem cells

Pluripotent stem cell lines can be derived from blastocyst embryos, which yield embryonic stem cell lines (ES cells), as well as the post-implantation epiblast, which gives rise to epiblast stem cell lines (EpiSCs). Remarkably, ES cells and EpiSCs display profound differences in the combination of g...

ORGANISM(S): Mus musculus

2010-05-17 | E-GEOD-12519 | biostudies-arrayexpress

Functional profile of bovine blastocyst-derived trophoblasts

Functional profile of bovine blastocyst-derived trophoblast cells

ORGANISM(S): Bos Taurus (ncbitaxon:9913)

2018-11-13 | MSV000083135 | MassIVE

Microarray analysis of the oocyte quality

Microarray analysis was performed in ooplast samples to identify gene expression profiles associated with the embryo capacity to develop to blastocyst stage A fraction of the cytoplasm from in vitro matured oocytes was collected and snap frozen. The oocytes were chemically activated and presumptive ...

ORGANISM(S): Bos taurus

2013-12-27 | E-GEOD-29191 | biostudies-arrayexpress

Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation

Establishment of pregnancy in ruminants requires blastocyst growth to form an elongated conceptus that produces interferon tau, the pregnancy recognition signal, and initiates implantation. Blastocyst growth and development requires secretions from the uterine endometrium. An early increase in circu...

ORGANISM(S): Ovis aries

2010-05-15 | E-GEOD-17401 | biostudies-arrayexpress

Comparative trascriptomic analysis between early-blastocyst and Hatched blastocyst

Comparative trascriptomic analysis between porcine early-blastocyst and Hatched blastocyst collected around day 5-6 direct comparison with dye-swap; two different arrays with 6 Samples each

ORGANISM(S): Sus scrofa

2015-06-21 | E-GEOD-38882 | biostudies-arrayexpress

Expression data from pig uterus in response to embryos at blastocyst satge and oocytes

The maternal tract plays a critical role in the success of early embryonic development providing an optimal environment for establishment and maintenance of pregnancy. Preparation of this environment requires an intimate dialogue between the embryo and her mother. To advance our understanding of the...

ORGANISM(S): Sus scrofa

2012-04-18 | E-GEOD-33262 | biostudies-arrayexpress

Day5-6 porcine blastocyst gene expression profile

Day5-6 porcine blastocyst gene expression profiling dye-swaped loop design with 3 biological replicates of Day5-6 blastocyst

ORGANISM(S): Sus scrofa

2015-06-22 | E-GEOD-38923 | biostudies-arrayexpress

mTOR activity paces human blastocyst stage developmental progression (data set 1)

Many mammals can temporally uncouple conception from parturition by pacing down their development around the blastocyst stage. In mice, this dormant state is achieved by decreasing the activity of the growth-regulating mTOR signaling pathway1. It is unknown whether this ability is conserved in mamma...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2024-08-06 | PXD029513 | Pride

Human blastoids model blastocyst development and implantation

PRJNA737139 | ENA

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