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GenomicsGenome-Wide And Phase-Specific DNA-Binding Rhythms Of BMAL1 Control Circadian Output Functions In Mouse Liver
Using chromatin immuno-precipitation (ChIP) combined with deep sequencing (ChIP-seq) we obtained a time resolved and genome-wide map of BMAL1 binding in mouse liver, which allowed to identify over two thousand binding sites with peak binding narrowly centered around Zeitgeber time (ZT) 6. Annotation...
ORGANISM(S): Mus musculus 
2011-02-23 | E-GEOD-26602 | biostudies-arrayexpress
ProteomicsBMAL1 associates with NOP58 in the nucleolus and contributes to pre-rRNA processing
The transcription factor BMAL1 is a core element of the circadian clock that contributes to cyclic control of genes transcribed by RNA polymerase II. By using biochemical cellular fractionation and immunofluorescence analyses we reveal a previously uncharacterized nucleolar localization for BMAL1. W...
ORGANISM(S): Mus musculus (Mouse) 
2020-08-25 | PXD018946 | Pride
Bmal1 interactome Nucleolus Circadian clock Ribosome biogenesis 
ProteomicsFLAG-BMAL1 Immunoprecipitation followed by LC MS/MS in mESCs
Immunoprecipitation with anti-FLAG antibody in nuclear extracts of FLAG-BMAL1 expressing mESCs. LC MS/MS was used to analyze the interactome of BMAL1 in mESCs.
ORGANISM(S): Mus musculus (Mouse) 
2025-08-16 | PXD050769 | Pride
Bmal1  mescs 
TranscriptomicsTranscriptome changes in mouse livers upon Bmal1 or Nr1d1 knock out and interactome of lnc-Crot by 4C-seq
To explore the circadian regulations of Bmal1, we examined the transcriptome changes in mouse livers upon Bmal1 knock out at two circadian time points, CT0 and CT12. To explore the circadian regulations of Nr1d1, we examined the transcriptome changes in mouse livers upon Nr1d1 knock out at two circa...
ORGANISM(S): Mus musculus 
2017-04-12 | GSE87299 | GEO
GenomicsLong-range chromosome interactions mediated by cohesin shape circadian gene expression [ChIP-Seq]
Mammalian circadian rhythm is established by the negative feedback loops consisting of a set of clock genes, which lead to the circadian expression of thousands of downstream genes. As genome-wide transcription is organized under the high-order chromosome structure, it is unclear how circadian gene ...
ORGANISM(S): Mus musculus 
2016-04-04 | E-GEOD-77162 | biostudies-arrayexpress
UnknownBMAL1 Associates with NOP58 in the Nucleolus and Contributes to Pre-rRNA Processing.
Not available
S-EPMC7256328 | biostudies-literature
TranscriptomicsLong-range chromosome interactions mediated by cohesin shape circadian gene expression [4C]
Mammalian circadian rhythm is established by the negative feedback loops consisting of a set of clock genes, which lead to the circadian expression of thousands of downstream genes. As genome-wide transcription is organized under the high-order chromosome structure, it is unclear how circadian gene ...
ORGANISM(S): Mus musculus 
2016-04-04 | E-GEOD-68830 | biostudies-arrayexpress
GenomicsMus musculus
Transcriptome changes in mouse livers upon Bmal1 or Nr1d1 knock out and interactome of lnc-Crot by 4C-seq
PRJNA344200 | ENA
UnknownGenome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver.
Not available
S-EPMC3043000 | biostudies-literature
GenomicsGenome-Wide And Phase-Specific DNA-Binding Rhythms Of BMAL1 Control Circadian Output Functions In Mouse Liver
Using chromatin immuno-precipitation (ChIP) combined with deep sequencing (ChIP-seq) we obtained a time resolved and genome-wide map of BMAL1 binding in mouse liver, which allowed to identify over two thousand binding sites with peak binding narrowly centered around Zeitgeber time (ZT) 6. Annotation...
ORGANISM(S): Mus musculus 
2011-02-23 | GSE26602 | GEO
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