Bock C C - OmicsDI

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Unknown (835)
Proteomics (85)
Transcriptomics (49)
Genomics (26)
Metabolomics (10)
Other (1)

Organisms

Chlamydomonas reinhardtii (81)
Pseudomonas canadensis (81)
Marchantia polymorpha subsp. ruderalis (81)
Methylocystis sp. (81)
Exiguobacterium sp. SH31 (81)
Porites pukoensis (81)
Bothrops insularis (81)
Bothrops jararaca (81)
Bothrops jararacussu (81)
Bothrops cotiara (81)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (81)
Dinosauria (81)
Streptomyces coelicolor (81)
Pseudomonas taiwanensis (81)
Burkholderia ubonensis MSMB22 (81)
Pseudomonas aeruginosa PA103 (81)
Artibeus jamaicensis (81)
Morchella importuna (81)
Clostridium autoethanogenum (81)
Microbacterium ginsengisoli (81)
Streptomyces sp. A494 Ydz-AH (81)
Shewanella oneidensis MR-1 (81)
Homo sapiens (45)
Mus musculus (20)
Arabidopsis thaliana (6)
Haemophilus influenzae (1)
Chlamydomonas reinhardtii (1)
Oryctolagus cuniculus (1)
Rattus norvegicus (1)
Escherichia coli (1)

Repository

pride (81)
biostudies-arrayexpress (62)
EGA (13)
MetaboLights (10)
MassIVE (2)
GPMDB (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (19)
Brain (8)
Leaf (5)
Skeletal muscle (4)
Epithelial cell (4)
Liver (4)
Blood cell (4)
Bone marrow (3)
Macrophage (3)
Heart (3)
Kidney (3)
Blood (3)
Muscle (2)
Spleen (2)
Fibroblast (2)
Hepatocyte (2)
U-251 MG cell (1)
J774.2 cell (1)
MIN-6 cell (1)
Astrocytoma cell (1)
HBL-1 cell (1)
LN-18 cell (1)
R1 cell (1)
Embryonic neural stem cell (1)
P493-6 cell (1)
Pulmonary artery smooth muscle cell line (1)
T-98G cell (1)
ES-D3 cell (1)
Pleural mesothelioma cell line (1)
L-428 cell (1)

Disease

Hepatocellular carcinoma (2)
Chronic myeloid leukemia (2)
Not Available (1)
Stroke (1)
Leukemia (1)
B-cell lymphoma (1)
Cardiovascular system disease (1)
Acute myeloid leukemia (1)
Influenza (1)
Myeloproliferative neoplasm (1)
Breast cancer (1)
Disease free (1)

Technology Type

Mass Spectrometry (81)
Shotgun proteomics (44)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry (9)
Data-dependent acquisition (6)
Gel-based experiment (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (2)
SRM/MRM (2)
Illumina HiSeq 3000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
MSE (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 3000 (2)
Liquid Chromatography MS - negative - direct infusion (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
LTQ-Orbitrap (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Q Exactive HF (1)
Q Exactive (1)
Diode array detection MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2021 (19)
2015 (17)
2023 (14)
2022 (11)
2014 (11)
2020 (11)
2025 (11)
2011 (10)
2016 (9)
2019 (8)
2012 (8)
2013 (7)
2024 (7)
2026 (4)
2005 (4)
2017 (3)
2010 (2)
2018 (1)

UNIPROT ID/AC

B6KR28_TOXGV (1)
V4Z2J5_TOXGV (1)
B9QI05_TOXGV (1)
A0A125YRL8_TOXGV (1)
B6KR90_TOXGV (1)
V4ZP24_TOXGV (1)
A0A0F7UUH3_TOXGV (1)
A0A0F7UXP4_TOXGV (1)
V4YSL5_TOXGV (1)
V4ZGI5_TOXGV (1)
B9PFU2_TOXGV (1)
B6KHC8_TOXGV (1)
B6KP08_TOXGV (1)
B9PH20_TOXGV (1)
A0A0F7UVN4_TOXGV (1)
V4YZX5_TOXGV (1)
V4ZIA1_TOXGV (1)
B6KFA7_TOXGV (1)
5811.TGME49_012150 (1)
A0A0F7UZR3_TOXGV (1)
B9PN16_TOXGV (1)
V5BD96_TOXGV (1)
B9QQB8_TOXGV (1)
A0A125YLF8_TOXGV (1)
5811.TGME49_072640 (1)
B9Q6X5_TOXGV (1)
B6KBN3_TOXGV (1)
B9QH48_TOXGV (1)
B6KP07_TOXGV (1)
B9PT75_TOXGV (1)

CHEBI ID

CHEBI:27748 (2)
CHEBI:16675 (2)
CHEBI:15414 (2)
CHEBI:16750 (2)
CHEBI:17154 (2)
CHEBI:16335 (2)
CHEBI:16474 (2)
CHEBI:17596 (2)
CHEBI:17687 (2)
CHEBI:9331 (1)
CHEBI:80353 (1)
CHEBI:71354 (1)
CHEBI:80544 (1)
CHEBI:30164 (1)
CHEBI:48107 (1)
CHEBI:2505 (1)
CHEBI:80373 (1)
CHEBI:77021 (1)
CHEBI:30614 (1)
CHEBI:60377 (1)
CHEBI:80355 (1)
CHEBI:81414 (1)
CHEBI:38209 (1)
CHEBI:62576 (1)
CHEBI:17888 (1)
CHEBI:32204 (1)
CHEBI:32200 (1)
CHEBI:57566 (1)
CHEBI:4209 (1)
CHEBI:15596 (1)

Metabolite Name

Accurate mass (2)
Fructose-2,6-bisphosphate (1)
Fructose-1,6-bisphosphate (1)
630.4 (Lyciumoside I) (1)
776.4 b (Lyciumoside IV) (1)
938.5 b (Attenoside) (1)
(22R,23R)-22,23-Dihydroxy-campest-4-en-3-one (1)
1-O-Sinapoyl-beta-D-glucose (1)
Norsolorinic acid anthrone (1)
Indolylmethylthiohydroximate (1)
5-PP-InsP5 (1)
Cellobionate (1)
4-(N-Nitrosomethylamino)-1-(3-pyridyl)-1-butanone (1)
Demethylphosphinothricin (1)
Chlorophyllide b (1)
Hydroxytamoxifen (1)
6-Phospho-beta-D-glucosyl-(1,4)-D-glucose (1)
Tetracenomycin E (1)
5-Amino-6-(5'-phosphoribosylamino)uracil (1)
Tetracenomycin B3 (1)
N2-Citryl-N6-acetyl-N6-hydroxy-L-lysine (1)
Sinapoyl malate (1)
6beta,7beta-Dihydroxykaurenoic acid (1)
Butin (1)
P-Hydroxyphenylacetylglycine (1)
Ureidoacrylate (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
3-Octaprenyl-4-hydroxybenzoate (1)
Acrylamide (1)
Cyanidin 3-O-beta-D-sambubioside (1)

Modification

15.994915 (7)
-17.026549 (6)
42.010565 (6)
57.021464 (5)
6.020129 (4)
45.029395 (4)
56.026215 (2)
59.036279 (2)
10.008269 (2)
0.984016 (2)
73.016378 (1)
58.005479 (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (10)
Methylation profiling by high throughput sequencing (8)
ChIP-seq (4)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
DNA-seq (1)

Release Date

2021 (97)
2020 (87)
2022 (82)
2025 (71)
2023 (66)
2019 (66)
2024 (63)
2018 (52)
2017 (52)
2015 (48)
2016 (39)
2014 (33)
2012 (26)
2013 (24)
2011 (23)
2010 (14)
2026 (11)
2009 (10)
2008 (8)
2005 (7)
2006 (6)
2007 (3)
2004 (3)
2001 (3)
2002 (2)
1999 (1)

Lab affiliation

Biochemistry (6)
European Molecular Biology Laboratory (3)
EDyP (3)
University of Basel, Biozentrum, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland (2)
Biozentrum, University of Basel, 4056 Basel, Switzerland (2)
Max Perutz Labs, Vienna Biocenter Campus (VBC), Dr.-Bohr-Gasse 9, 1030, Vienna, Austria. (2)
Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna (2)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
Biology Department (1)
University of Newcastle, Callaghan, NSW, Australia (1)
Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), 1030 Vienna, Austria (1)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
1Institute for Genetics, University of Cologne, Cologne, Germany. 2Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. 3Center for Molecular Medicine (CMMC), University of Cologne, Cologne, Germany. (1)
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (1)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Riedberg Campus, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany (1)
Medical University of Vienna, Center for Anatomy and Cell Biology, Division for Cell and Developmental Biology, Vienna, Austria (1)
1. Department of Clinical Genetics, Erasmus University Medical Center, 3015 GE Rotterdam, The Netherlands 2. Department of Pediatrics, Erasmus University Medical Center, 3015 GE Rotterdam, The Netherlands 3. Center for Lysosomal and Metabolic Diseases, Erasmus Medical Center, 3015 GE Rotterdam, The Netherlands (1)
Ghent University VIB Belgium (1)
Proteomics Core Facility Biozentrum, University of Basel Klingelbergstrasse 50/70 CH-4056 Basel / Switzerland (1)
Max-Planck-Institute of Molecular Plant Physiology (1)
IGF, Univ. Montpellier, CNRS, INSERM, Montpellier, France. (1)
Munich Cluster for Systems Neurology, Ludwig-Maximilians-University, Feodor-Lynen Str. 17, 81377 München (1)
CECAD Research Center, Institute for Genetics, University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
Alexander Schmidt, Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland, Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Alexander Schmidt, Biozentrum, University of Basel Spitalstrasse 41, CH-4056 Basel, Switzerland Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Institute for plant biology and biotechnology, University of Münster (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil, (1)
1 Department I of Internal Medicine, Center for Integrated Oncology (CIO) Köln-Bonn. 2 Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD) (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)

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Tsiotis coxiella - Quantitative proteome profiling of C

Cox. Q212 vs Q212 res

ORGANISM(S): Coxiella burnetii

2012-07-20 | PRD000520 | Pride

Molecular phenotypes of human parvovirus B19 in patients with myocarditis.

Not available

S-EPMC3999338 | biostudies-literature

Characterization of two mutually orthogonal pyrrolysyl-tRNA synthetase/tRNAPyl pairs residing in the same organism

Site-specific incorporation of distinct non-canonical amino acids (ncAAs) into proteins via genetic code expansion requires mutually orthogonal aminoacyl-tRNA synthetase (aaRS)/tRNA pairs. Pyrrolysyl–tRNA synthetase (PylRS)/tRNAPyl pairs are ideal for genetic code expansion and have been extensively...

ORGANISM(S): Haloferax volcanii (Halobacterium volcanii)

2022-05-12 | PXD027053 | Pride

Validation of the Chinese Manchester foot pain and disability index (C-MFPDI) among patients with inflammatory arthritis.

Not available

S-EPMC6343242 | biostudies-literature

Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus

Bacteria use a range of small signaling molecules to tune their physiology in response to changes in the environment. It has remained unclear if these regulatory networks operate independently or if they interact to optimize bacterial growth and survival. Here, we demonstrate that (p)ppGpp and c-di-...

ORGANISM(S): Caulobacter crescentus (strain NA1000 / CB15N)

2020-12-08 | PXD019846 | Pride

C-di-gmp Adaptation Ppgpp Glucose metabolism

Cost-effectiveness and budget impact of the microprocessor-controlled knee C-Leg in transfemoral amputees with and without diabetes mellitus.

Not available

S-EPMC7188726 | biostudies-literature

Crossover study of amputee stair ascent and descent biomechanics using Genium and C-Leg prostheses with comparison to non-amputee control.

Not available

S-EPMC5645229 | biostudies-literature

Bias Correction Methods Explain Much of the Variation Seen in Breast Cancer Risks of BRCA1/2 Mutation Carriers.

Not available

S-EPMC4979233 | biostudies-literature