Bock P P - OmicsDI

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Unknown (745)
Proteomics (60)
Transcriptomics (44)
Genomics (20)
Metabolomics (10)
Other (1)

Organisms

Homo sapiens (63)
Mus musculus (29)
Arabidopsis thaliana (11)
Rattus norvegicus (2)
Escherichia coli (2)
Haemophilus influenzae (1)
Chlamydomonas reinhardtii (1)
Oryctolagus cuniculus (1)
Caulobacter vibrioides NA1000 (1)
Haloferax volcanii (1)
Lacrimispora saccharolytica (1)
Nicotiana tabacum (1)
Saccharomyces cerevisiae (1)
Sarcophilus harrisii (1)
Sporothrix sp. (1)
Thermochaetoides thermophila (1)
Thermochaetoides thermophila DSM 1495 (1)
Toxoplasma gondii (1)
Toxoplasma gondii PRU (1)
Toxoplasma gondii RH (1)

Repository

biostudies-arrayexpress (54)
pride (54)
EGA (10)
MetaboLights (10)
PAXDB (3)
MassIVE (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (9)
Brain (6)
Epithelial cell (4)
Blood (3)
Blood cell (3)
Kidney (3)
Leaf (3)
Skeletal muscle (3)
Liver (2)
Spleen (2)
A-431 cell (1)
B cell (1)
B-cell lymphoma cell (1)
B-lymphocyte (1)
C2C12 cell (1)
Calu-3 cell (1)
ES-D3 cell (1)
ES-E14 cell (1)
HBL-1 cell (1)
HEK-293 cell (1)
HL-60 cell (1)
HeLa cell (1)
Hodgkin lymphoma cell line (1)
IMR-32 cell (1)
J774.2 cell (1)
JURKAT E-6.1 cell (1)
KM-H2 cell (1)
L-428 cell (1)
L-540 cell (1)
LN-18 cell (1)

Disease

Chronic myeloid leukemia (2)
Not Available (1)
Breast cancer (1)
Cardiovascular system disease (1)
Disease free (1)
Leukemia (1)
Myeloproliferative neoplasm (1)
Stroke (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (28)
Bottom-up proteomics (14)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry (9)
Gel-based experiment (4)
Data-dependent acquisition (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
HDMSE (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - direct infusion (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
LTQ-Orbitrap (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
Instrument (1)
Q Exactive (1)
Q Exactive HF (1)
Diode array detection MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2015 (20)
2021 (14)
2023 (10)
2016 (8)
2014 (8)
2011 (8)
2020 (8)
2019 (8)
2013 (7)
2012 (7)
2025 (5)
2022 (5)
2005 (4)
2026 (3)
2017 (3)
2010 (2)
2024 (2)
2018 (1)

UNIPROT ID/AC

10116.ENSRNOP00000001467 (2)
10116.ENSRNOP00000004127 (2)
10116.ENSRNOP00000007070 (2)
10116.ENSRNOP00000007645 (2)
10116.ENSRNOP00000010798 (2)
10116.ENSRNOP00000019755 (2)
10116.ENSRNOP00000028732 (2)
10116.ENSRNOP00000031360 (2)
10116.ENSRNOP00000050143 (2)
10116.ENSRNOP00000052803 (2)
10116.ENSRNOP00000054637 (2)
10116.ENSRNOP00000059667 (2)
10116.ENSRNOP00000060017 (2)
10116.ENSRNOP00000061650 (2)
10116.ENSRNOP00000064401 (2)
10116.ENSRNOP00000064646 (2)
10116.ENSRNOP00000065372 (2)
10116.ENSRNOP00000065625 (2)
10116.ENSRNOP00000065704 (2)
10116.ENSRNOP00000066126 (2)
10116.ENSRNOP00000066155 (2)
10116.ENSRNOP00000066428 (2)
10116.ENSRNOP00000067288 (2)
10116.ENSRNOP00000067711 (2)
1433B_RAT (2)
1433E_RAT (2)
1433F_RAT (2)
1433G_RAT (2)
1433T_RAT (2)
1433Z_RAT (2)

CHEBI ID

CHEBI:15414 (2)
CHEBI:16335 (2)
CHEBI:16474 (2)
CHEBI:16675 (2)
CHEBI:16750 (2)
CHEBI:17154 (2)
CHEBI:17596 (2)
CHEBI:17687 (2)
CHEBI:27748 (2)
CHEBI:102265 (1)
CHEBI:1156 (1)
CHEBI:133316 (1)
CHEBI:133365 (1)
CHEBI:138560 (1)
CHEBI:138872 (1)
CHEBI:15346 (1)
CHEBI:15347 (1)
CHEBI:15351 (1)
CHEBI:15366 (1)
CHEBI:15402 (1)
CHEBI:15422 (1)
CHEBI:15424 (1)
CHEBI:15428 (1)
CHEBI:15435 (1)
CHEBI:15596 (1)
CHEBI:15603 (1)
CHEBI:15610 (1)
CHEBI:15627 (1)
CHEBI:15725 (1)
CHEBI:15727 (1)

Metabolite Name

Accurate mass (2)
(+)-Neomenthol (1)
(-)-Medicocarpin (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene (1)
(1R,2S)-Naphthalene 1,2-oxide (1)
(2-Naphthyl)methanol (1)
(22R,23R)-22,23-Dihydroxy-campest-4-en-3-one (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(2S,3S)-3-Methylphenylalanine (1)
(3R,2'S)-Myxol 2'-alpha-L-fucoside (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
(4E)-2-Oxohexenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(Indol-3-yl)acetamide (1)
(R)-(Homo)2-citrate (1)
(R)-10-Hydroxystearate (1)
(R)-Mandelamide (1)
(R)-Mandelate (1)
(S)-DNPA (1)
(S)-Malate (1)
(Z)-3-Hexen-1-ol acetate (1)
(Z)-3-Peroxyaminoacrylate (1)
1,1'-Dihydroxy-1,1',2,2'-tetrahydrolycopene (1)
1,2-Dihydronaphthalene-1,2-diol (1)
1,2-Dihydroxy-8-methylnaphthalene (1)
1,3-Diaminopropane (1)
1,8-Cineole (1)

Modification

15.994915 (9)
-17.026549 (8)
42.010565 (8)
57.021464 (7)
45.029395 (5)
6.020129 (5)
10.008269 (3)
0.984016 (2)
+3amu) (1)
26.01565 (1)
4x(15)N labeled L-arginine (1)
56.026215 (1)
58.005479 (1)
59.036279 (1)
73.016378 (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (8)
Methylation profiling by high throughput sequencing (6)
ChIP-seq (4)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (103)
2020 (89)
2023 (73)
2022 (70)
2024 (62)
2019 (58)
2025 (51)
2018 (45)
2017 (40)
2016 (37)
2015 (36)
2014 (27)
2011 (21)
2013 (17)
2012 (16)
2010 (11)
2009 (10)
2008 (7)
2026 (6)
2006 (5)
2005 (4)
2007 (4)
2004 (2)
2001 (2)
2002 (1)
1999 (1)
1998 (1)

Lab affiliation

Biochemistry (6)
European Molecular Biology Laboratory (3)
EDyP (2)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Goettingen, Germany (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
CECAD Research Center, Institute for Genetics, University of Cologne, 50931 Cologne, Germany (1)
CECAD Research Center, Institute for Genetics, University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
CECAD-Cluster of Excellence, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931, Cologne, Germany; Department II of Internal Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, Kerpener Str. 62, D-50937, Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch-Str. 21, D-50931, Cologne, Germany (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Christian Doppler Laboratory for Chemical Epigenetics and Anti-Infectives Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14 AKH BT 25.3 1090 Vienna, Austria (1)
CeMM, Research Center for Molecular Medicine, Austrian Academy of Sciences, Austria (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
Department of Clinical Genetics, Erasmus University Medical Center, 3015 GE Rotterdam, Netherlands Department of Pediatrics, Erasmus University Medical Center, 3015 GE Rotterdam, Netherlands Center for Lysosomal and Metabolic Diseases, Erasmus University Medical Center, 3015 GE Rotterdam, Netherlands (1)
Department of Molecular Neurosciences, Center for Brain 1099 Research, Medical University of Vienna, Vienna, Austria (1)
Derpartmen of Dermatology Medical University of Vienna (1)
European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany (1)
Ghent University VIB Belgium (1)
Ghent University, VIB (1)
IGF, Univ. Montpellier, CNRS, INSERM, Montpellier, France. (1)
Institut für Medizinische physik und biophysik, Charité, corporate member of Frei universität berlin, Humboldt Universität zu berlin and Berlin institute of Health. berlin, germany (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. (1)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany (1)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Riedberg Campus, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany (1)
Institute of Human Genetics, Jena University Hospital, Friedrich Schiller University, Am Klinikum 1, 07747 Jena, Germany Center for Rare Diseases, University Hospital Jena, Friedrich Schiller University, Am Klinikum1, 07747 Jena, Germany (1)

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Molecular detection of P. vivax and P. ovale foci of infection in asymptomatic and symptomatic children in Northern Namibia.

Not available

S-EPMC6513099 | biostudies-literature

Seismogeodetic P-wave Amplitude: No Evidence for Strong Determinism.

Not available

S-EPMC6919942 | biostudies-literature

Characterization of two mutually orthogonal pyrrolysyl-tRNA synthetase/tRNAPyl pairs residing in the same organism

Site-specific incorporation of distinct non-canonical amino acids (ncAAs) into proteins via genetic code expansion requires mutually orthogonal aminoacyl-tRNA synthetase (aaRS)/tRNA pairs. Pyrrolysyl–tRNA synthetase (PylRS)/tRNAPyl pairs are ideal for genetic code expansion and have been extensively...

ORGANISM(S): Haloferax volcanii (Halobacterium volcanii)

2022-05-12 | PXD027053 | Pride

Time-resolved inducible knock-down of Clp protease subunits in tobacco identifies putative protease substrates

The Clp protease complex in plants is the one with the highest complexity through all life kingdoms. It is composed of 14 nuclear- and plastid-encoded subunits which are allocated in different rings across the complex. The proteolytic ring (P-ring; ClpP3-ClpP6) and non-proteolytic ring (R-ring; ClpR...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2022-02-22 | PXD008305 | Pride

Clp protease chloroplast protein degradation protease substrate nicotiana tabacum inducible rnai lc-msms shotgun proteomics

Cathepsin K Contributes to Cavitation and Collagen Turnover in Pulmonary Tuberculosis

Cavitation in tuberculosis (TB) enables highly efficient person-to-person aerosol transmission. Currently, a number of hypotheses exist regarding the mechanisms underlying this process. To explore this process, we undertook an unbiased next-generation transcriptional analysis of samples from cavity ...

ORGANISM(S): Oryctolagus cuniculus

2015-11-03 | E-GEOD-68206 | biostudies-arrayexpress

When Paying Attention Pays Back: Missense Mutation c.1006G>A p. (Val336Ile) in PRKAG2 Gene Causing Left Ventricular Hypertrophy and Conduction Abnormalities in a Caucasian Patient: Case Report and Literature Review.

Not available

S-EPMC11395525 | biostudies-literature

Molecular phenotypes of human parvovirus B19 in patients with myocarditis.

Not available

S-EPMC3999338 | biostudies-literature

Arthroscopic Distal Clavicle Bone Bock Combined With Hill-Sachs Remplissage for Primary Anterior Shoulder Instability Treatment.

Not available

S-EPMC10995697 | biostudies-literature

Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus

Bacteria use a range of small signaling molecules to tune their physiology in response to changes in the environment. It has remained unclear if these regulatory networks operate independently or if they interact to optimize bacterial growth and survival. Here, we demonstrate that (p)ppGpp and c-di-...

ORGANISM(S): Caulobacter crescentus (strain NA1000 / CB15N)

2020-12-08 | PXD019846 | Pride

C-di-gmp Adaptation Ppgpp Glucose metabolism

Androgen Deprivation and Sleep Disturbance: A Mixed Methods Pilot Study of Remote Assessment and Intervention.

Not available

S-EPMC9582038 | biostudies-literature

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