Bone - OmicsDI

OmicsDI

Browse
Submit Data
Databases
API
Help

121091 Results

Show all Save search Copy query

Show results for

Unknown (77958)
Transcriptomics (22596)
Genomics (17433)
Proteomics (1871)
Metabolomics (541)
Other (265)
Methylation profiling (175)
Clinical (78)
Genomic (68)
Models (41)
Multiomics (5)

Organisms

Mus musculus (10164)
Homo sapiens (9804)
Drosophila melanogaster (918)
Rattus norvegicus (640)
Arabidopsis thaliana (625)
Saccharomyces cerevisiae (508)
Caenorhabditis elegans (341)
Danio rerio (155)
Sus scrofa (146)
Schizosaccharomyces pombe (139)
Gallus gallus (124)
Bos taurus (107)
Escherichia coli (105)
Mycobacterium tuberculosis (100)
Candida albicans (99)
Thermus thermophilus HB8 (71)
Canis lupus familiaris (71)
Staphylococcus aureus (64)
Apis mellifera (52)
Zea mays (52)
Bacillus subtilis (49)
Oncorhynchus mykiss (47)
Salmo salar (38)
Plasmodium falciparum (35)
Streptococcus pneumoniae (33)
Campylobacter jejuni (32)
Yersinia pestis (31)
Sinorhizobium meliloti (31)
cellular organisms (12)
Chordata (7)

Organisms

Mus musculus (6881)
Homo sapiens (3718)
Rattus norvegicus (232)
Danio rerio (46)
Gallus gallus (45)
Macaca mulatta (36)
Canis lupus familiaris (36)
Sus scrofa (22)
Equus caballus (17)
Staphylococcus aureus (17)
unidentified (15)
Mus (12)
mouse gut metagenome (11)
Bos taurus (11)
Mycobacterium tuberculosis (8)
Oryctolagus cuniculus (7)
Mus musculus musculus (7)
Oryzias latipes (6)
Mammalia (5)
whale fall metagenome (4)
Osedax frankpressi (4)
fossil metagenome (4)
Xenopus laevis (4)
Macaca fascicularis (4)
Ovis aries (4)
gut metagenome (4)
feces metagenome (4)
Papio sp. (3)
Heterocephalus glaber (3)
Cervus nippon (3)

Repository

biostudies-arrayexpress (17063)
ENA (13674)
geo (8618)
pride (1051)
EGA (1013)
MetaboLights (501)
MassIVE (364)
iProX (204)
jPOST (184)
ExpressionAtlas (86)
NODE (85)
dbGaP (68)
BioModels (33)
GPMDB (29)
MetabolomicsWorkbench (28)
PanoramaPublic (11)
GNPS (10)
PAXDB (10)
EVA (9)
Cell Collective (5)
PeptideAtlas (5)
LINCS (2)
PMR (2)
FAIRDOMHub (1)

Tissue

Bone marrow (385)
Liver (47)
Brain (41)
Lung (39)
Spleen (39)
Kidney (38)
Colon (31)
Heart (29)
Pancreas (12)
Stomach (10)
Ovary (9)
Testis (9)
Lymph node (8)
Placenta (8)
Adrenal gland (8)
Small intestine (7)
Duodenum (7)
Esophagus (7)
Prostate gland (7)
Zone of skin (6)
Uterus (6)
Urinary bladder (6)
Endometrium (5)
Adipose tissue (5)
Thymus (5)
Rectum (5)
Gall bladder (5)
Breast (5)
Cerebral cortex (5)
Pituitary gland (5)

Disease

Normal (120)
Multiple myeloma (41)
Osteosarcoma (34)
Acute myeloid leukemia (29)
Neuroblastoma (13)
Melanoma (10)
Hepatocellular carcinoma (7)
Myelodysplastic syndrome (6)
Chronic myelogenous leukemia (6)
Breast carcinoma (6)
Breast adenocarcinoma (5)
Small cell lung carcinoma (4)
Erythroleukemia (3)
Chondrosarcoma (3)
Mesothelioma (3)
Diffuse large B-cell lymphoma (3)
Large cell lung carcinoma (3)
Rhabdomyosarcoma (3)
Pancreatic carcinoma (3)
Ovarian carcinoma (3)
Non-small cell lung carcinoma (3)
Renal cell carcinoma (3)
Pancreatic adenocarcinoma (3)
Gastric adenocarcinoma (3)
Squamous cell lung carcinoma (3)
Cervical squamous cell carcinoma (3)
Ovarian adenocarcinoma (3)
Lung adenocarcinoma (3)
Gastric tubular adenocarcinoma (2)
Cecum adenocarcinoma (2)

Technology Type

Illumina HiSeq 2000 (30)
Illumina HiSeq 2500, ILLUMINA (7)
ILLUMINA, Illumina HiSeq 2000 (6)
Illumina HiSeq 2500 (4)
Illumina MiSeq (4)
Illumina HiSeq 2000, ILLUMINA (4)
ILLUMINA, NextSeq 500 (3)
ILLUMINA, HiSeq X Ten (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II (2)
Illumina MiSeq, Illumina HiSeq 2000, ILLUMINA (1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
Illumina CytoSNP 12 bead array, nanostring (1)
Illumina HT12, Affymetrix miRNA 4.0 Array (1)
Illumina Human 660W Quad BeadChip, Illumina HumanOmniExpress BeadChip (1)
NextSeq 500, Illumina HiSeq 4000, ILLUMINA (1)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Genome-Wide Human SNP Array 6.0 - Thermo Fisher Scientific (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Applied Biosystems (1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Infinium Omni2.5M (1)
Illumina MiSeq, ILLUMINA (1)
Affymetrix OncoScan FFPE Express (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HumanMethylation450 (1)
Illumina HumanCoreExome-12v1-0, Illumina HumanCoreExome-12v1-1, Illumina HumanCoreExome-24v1-0 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)

Instrument Platform

Illumina NovaSeq 6000 (426)
NextSeq 500 (255)
Illumina HiSeq 2000 (236)
Illumina HiSeq 2500 (199)
Illumina HiSeq 4000 (180)
NextSeq 550 (99)
Illumina MiSeq (48)
Scanning hardware (46)
Axon GenePix 4000B scanning hardware (44)
NextSeq 2000 (43)
GenePix 4000B [Axon Instruments] (41)
Illumina HiSeq 1500 (40)
Axon- GenePix4000B (37)
GenePix 4000A [Axon Instruments] (30)
Illumina NovaSeq X (28)
Illumina Genome Analyzer II (27)
Illumina HiSeq 3000 (23)
Axon GenePix 4000A scanning hardware (22)
Illumina Genome Analyzer IIx (20)
ScanArray Express HT [PerkinElmer] (20)
ScanArray Express HT (19)
HiSeq X Ten (17)
418 [Affymetrix] (14)
Other (13)
NA (13)
ScanArray 5000 [PerkinElmer] (12)
G2565AA DNA microarray scanner [Agilent] (12)
DNBSEQ-G400 (12)
ScanArray 4000 [PerkinElmer] (11)
GenePix Personal 4100A [Axon Instruments] (11)

Publication Date

2010 (2647)
2013 (2446)
2012 (1865)
2014 (1837)
2011 (1806)
2015 (1755)
2025 (1640)
2026 (1448)
2024 (1416)
2023 (1274)
2016 (1272)
2022 (1216)
2008 (1151)
2021 (1020)
2009 (916)
2020 (867)
2019 (681)
2018 (617)
2007 (604)
2017 (549)
2006 (409)
2005 (402)
2004 (129)
2003 (36)
2002 (5)
2001 (2)
2027 (1)

UNIPROT ID/AC

P01270 (3)
Q75N73 (2)
Q9EQ21 (2)
Q921I1 (2)
Q13950 (2)
O00300 (2)
O14788 (2)
P16220 (2)
P10415 (2)
P07321 (2)
P01137 (2)
Q9BQB4 (1)
P09603 (1)
O15528 (1)
Q9Y6Q6 (1)
P04628 (1)
Q16850 (1)
Q9BQG2 (1)
B3KXN9 (1)
Q53HM1 (1)
Q4FEB3 (1)
P50914 (1)
Q9HBF5 (1)
Q86SK9 (1)
E9KL42 (1)
Q3I5F7 (1)
P33897 (1)
Q99884 (1)
A8MU28 (1)
P35219 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:27468 (21)
CHEBI:17151 (20)
CHEBI:29034 (4)
CHEBI:24875 (2)
CHEBI:16565 (2)
CHEBI:28940 (2)
CHEBI:27647 (2)
CHEBI:16290 (2)
CHEBI:30794 (2)
CHEBI:28453 (2)
CHEBI:16313 (2)
CHEBI:17703 (2)
CHEBI:15355 (2)
CHEBI:28424 (2)
CHEBI:32984 (2)
CHEBI:17278 (2)
CHEBI:15750 (2)
CHEBI:15812 (2)
CHEBI:16478 (2)
CHEBI:16250 (2)
CHEBI:15876 (2)
CHEBI:17049 (2)
CHEBI:17813 (2)
CHEBI:27485 (2)
CHEBI:27754 (2)
CHEBI:27969 (2)
CHEBI:15927 (2)
CHEBI:28031 (2)
CHEBI:16110 (2)
CHEBI:16870 (2)

Metabolite Name

Hypoxanthine (102)
Creatinine (100)
Creatine (99)
Adenosine (96)
Taurine (93)
Uridine (86)
Adenine (84)
Uracil (83)
Xanthine (80)
Inosine (79)
Choline (74)
Cytidine (70)
L-Tyrosine (70)
Betaine (69)
Guanosine (69)
Cytosine (67)
Guanine (66)
L-Phenylalanine (66)
Thymine (64)
Citrulline (64)
Ornithine (64)
Xanthosine (64)
L-Histidine (62)
Riboflavin (62)
L-Tryptophan (62)
Uric acid (62)
Citric acid (60)
Spermidine (59)
L-Glutamine (59)
Thymidine (58)

First Public Date

2024 (1757)
2014 (1723)
2025 (1699)
2026 (1644)
2023 (1341)
2022 (1091)
2021 (999)
2020 (856)
2019 (680)
2018 (517)
2017 (477)
2015 (432)
2016 (297)
2013 (156)
2012 (2)
2011 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (27)
Finite element spatial model (1)
Boolean model (1)
Partial differential equation model (1)

Study status

Completed (38)
Recruiting (18)
Terminated (5)
Withdrawn (5)
Not yet recruiting (5)
Active, not recruiting (3)
Not provided (3)
Ongoing (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (14)
Globe Institute, University of Copenhagen, Denmark (10)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (7)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (7)
Globe Institute, University of Copenhagen (6)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (5)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, UK (4)
The University of Manchester (4)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (3)
BioArCh, University of York, United Kingdom (3)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (3)
Center of Molecular and Cellular Oncology, Yale University (3)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (3)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (3)
Emory University (3)
Goethe-Universität Frankfurt, Georg-Speyer-Haus, Paul-Ehrlich-Str. 42-44, Frankfurt am Main, GERMANY (3)
Head of the Curie Institute Mass Spectrometry Platform (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
The University of Melbourne (3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
Yale University (3)
1 German Cancer Research Center (DKFZ), Heidelberg, Germany 2 Heidelberg University, Medical Faculty, Heidelberg, Germany (lab head) (2)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (2)
All India Institute of Medical Sciences, New Delhi, India (2)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305, USA (2)
BioArCh, University of York, UK (2)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. (2)
College of Pharmaceutical Sciences, Zhejiang University (2)
Cornell University (2)

Keyword

Cyclosporine (7)
Cyclosporins (7)
Fludarabine (6)
Cyclophosphamide (6)
Mycophenolic Acid (5)
Small intestine lymphoma (5)
Fludarabine phosphate (5)
Etoposide (5)
Sargramostim (5)
Stage IV adult lymphoblastic lymphoma (4)
Stage IV adult T-cell leukemia/lymphoma (4)
Extranodal marginal zone B-cell lymphoma of mucosa-associated lymphoid tissue (4)
Methotrexate (4)
Intraocular lymphoma (4)
Etoposide phosphate (4)
Anaplastic large cell lymphoma (4)
Inflammatory Bowel Disease (3)
Primary central nervous system non-Hodgkin lymphoma (3)
Stage III adult lymphoblastic lymphoma (3)
Stage IV adult Burkitt lymphoma (3)
Stage IV adult diffuse large cell lymphoma (3)
Stage IV adult diffuse mixed cell lymphoma (3)
Stage IV adult diffuse small cleaved cell lymphoma (3)
Stage IV adult immunoblastic large cell lymphoma (3)
Recurrent adult Burkitt lymphoma (3)
Recurrent adult diffuse large cell lymphoma (3)
Recurrent adult diffuse mixed cell lymphoma (3)
Recurrent adult diffuse small cleaved cell lymphoma (3)
Recurrent adult Hodgkin lymphoma (3)
Recurrent adult immunoblastic large cell lymphoma (3)

IsPrivate

False (33)

Model Flag

Non Kinetic (3)
Non Miriam (1)

Submitter Keywords

Machine Learning Model (1)

Classification

bacteria (59)
fungi (7)
protozoa (4)
viruses (2)

Modification

Not available (7)
15.994915 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
4x(2)H labeled dimethylated residue (2)
57.021464 (2)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
6x(2)H labeled dimethylated L-arginine (1)
Methionine (1)

Study type

Transcription profiling by array (10035)
ChIP-seq (1375)
RNA-seq of coding RNA (1354)
ChIP-chip by tiling array (841)
Unknown experiment type (569)
Comparative genomic hybridization by array (511)
Other (304)
Methylation profiling by array (251)
RNA-seq of coding RNA from single cells (247)
ChIP-chip by array (237)
Methylation profiling by high throughput sequencing (151)
RNA-seq of non coding RNA (138)
Genotyping by array (102)
Transcription profiling by RT-PCR (95)
DNA-seq (92)
RNA-seq of total RNA (67)
MicroRNA profiling by array (60)
Transcription profiling by tiling array (48)
Cell line - High-throughput sequencing (47)
Animal - High-throughput sequencing (38)
Proteomic profiling by array (30)
ATAC-seq (29)
Transcription profiling by SAGE (28)
RNAi profiling by array (26)
Single nucleus RNA sequencing (25)
Human - High-throughput sequencing (24)
Spatial transcriptomics by high-throughput sequencing (22)
High-throughput sequencing (20)
RIP-seq (19)
CLIP-seq (17)

Release Date

2022 (9218)
2025 (8279)
2021 (8268)
2023 (8157)
2024 (6960)
2020 (6680)
2019 (5266)
2018 (4718)
2015 (4458)
2016 (4340)
2017 (4104)
2014 (4056)
2013 (3973)
2010 (3446)
2012 (3062)
2011 (2826)
2008 (1587)
2009 (1537)
2026 (1380)
2007 (872)
2006 (670)
2005 (584)
2004 (207)
2003 (96)
2001 (69)
2002 (66)
2000 (43)
1999 (40)
1998 (34)
1997 (15)

Location

United States (50)
Germany (7)
Australia (6)
United Kingdom (4)
Japan (4)
France (4)
Italy (3)
Netherlands (3)
Austria (3)
India (2)
Denmark (2)
Greece (2)
Belgium (2)
Canada (2)
Norway (1)
Portugal (1)
China (1)
Poland (1)
Czechia (1)
Spain (1)
Switzerland (1)

Previous page
1 / 12110
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 12110
Next page

Sort by:

Relevance

Page size

Inhibiting glutaminase exerts opposite effects on ovariectomy-induced and age-related reductions in murine bone mass

Recent studies have provided links between glutamine metabolism and bone remodeling, but little is known about its role in primary osteoporosis progression. We aimed to determine the effects of inhibiting glutaminase (GLS) on two types of primary osteoporosis and elucidate the related metabolism. To...

2024-06-17 | MTBLS9415 | MetaboLights

Untargeted LC–MS Metabolomic Analysis of Connexin 43 in Bone Metabolism

MC3T3-E1 cells were divided into two groups: si-NC and si-Connexin43. Cx43 expression was knocked down using siRNA transfection, followed by LC–MS-based untargeted metabolomic analysis to investigate metabolic alterations associated with Connexin 43 deficiency in osteoblasts and its potential rol...

2026-09-29 | MTBLS14532 | MetaboLights

Strontium chelate with Achyranthes bidentata polysaccharide as a carrier promotes bone regeneration through mediating gut-liver-bone axis: The TD chicken model

This study investigates the effect of Achyranthes bidentata polysaccharide-strontium (ABPS-Sr) chelate on tibial dyschondroplasia (TD) in broilers and its underlying mechanisms. TD is a prevalent leg disorder in commercial broilers characterized by reduced angiogenesis in the tibial growth plate ...

2025-09-25 | MTBLS13045 | MetaboLights

Strontium chelate with Achyranthes bidentata polysaccharide as a carrier promotes bone regeneration through mediating gut-liver-bone axis: The TD chicken model

2025-09-24 | MTBLS13038 | MetaboLights

Metabolic-engineered probiotic-OMVs as nanovaccine mediating sequential immunomodulation for chronic bone infection immunotherapy

Chronic, drug-resistant bone infection caused by methicillin-resistant Staphylococcus aureus (MRSA) features an immunosuppressive niche enabling persistent infection and impaired bone healing. Specific treatment requires initial antibacterial immune activation against infection, followed by resha...

2026-03-19 | MTBLS14091 | MetaboLights

Harnessing Exogenous Stimuli and Functionally 3D Aligned Fibrous Scaffolds for Spatiotemporal Modulation of Bone Regeneration

Bone regeneration requires spatiotemporal coordination of immune modulation, stem cell recruitment, angiogenesis, and osteogenesis, yet most scaffolds lack sequential control across healing phases. We develop a near-infrared (NIR)-responsive therapeutic platform that integrates clinically av...

2026-03-04 | MTBLS13974 | MetaboLights

Pla2g7 regulates bone homeostasis via Alox12/12-HETE/Gpr31 signaling axis

Bone homeostasis mainly depends on the equilibrium of osteoclasts and osteoblasts, overactivated osteoclasts play a pivotal role in the progression of osteoporosis. Here, we revealed that Pla2g7 (phospholipase A2 group VII) was positively correlated with bone resorption in clinic. By single-cell ...

2025-10-30 | MTBLS13141 | MetaboLights

Targeting arginine metabolism reverses bone immunosuppressive microenvironment and metastasis in ARID1A-deficient triple negative breast cancer

Bone metastasis is a lethal consequence of breast cancer. AT-rich interaction domain 1A gene (ARID1A), a subunit of the switch/sucrose non-fermentable (SWI/SNF) complex, regulates immunosuppressive tumor microenvironment. ARID1A deficient triple negative breast cancer promotes bone metastasis.To ...

2026-03-24 | MTBLS12768 | MetaboLights

Bone loss with aging is independent of gut microbiome in mice.

Emerging evidence suggests a significant role of gut microbiome in bone health. Aging is well recognized as a crucial factor influencing the gut microbiome. In this study, we investigated whether age-dependent microbial change contributes to age-related bone loss in CB6F1 mice. The bone phenotype...

2024-09-06 | MTBLS10321 | MetaboLights

Gut Microbiota Dysbiosis and Hypercholesterolemia Are Associated with Bone Metastasis in Non-Small Cell Lung Cancer

We collected baseline fecal samples from 85 patients with newly diagnosed lung cancer, 51 patients with bone metastasis (M group), and 34 patients without bone metastasis (N group). We conducted metagenomic and metabolomic sequencing to compare the differences in gut microbiota and metabolites betwe...

2026-07-10 | MTBLS15004 | MetaboLights