Bone regeneration

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Mus musculus (235)
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Technology Type

Mass Spectrometry (51)
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Mass spectrometry assay (6)
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2004 (1)

CHEBI ID

CHEBI:47979 (1)
CHEBI:189710 (1)
CHEBI:47878 (1)
CHEBI:28013 (1)
CHEBI:191640 (1)
CHEBI:17665 (1)
CHEBI:84634 (1)
CHEBI:21949 (1)
CHEBI:24344 (1)
CHEBI:5417 (1)
CHEBI:18009 (1)
CHEBI:37455 (1)
CHEBI:59640 (1)
CHEBI:15682 (1)
CHEBI:15859 (1)
CHEBI:16450 (1)
CHEBI:15713 (1)
CHEBI:16264 (1)
CHEBI:17659 (1)
CHEBI:17822 (1)
CHEBI:15721 (1)
CHEBI:15414 (1)
CHEBI:16680 (1)
CHEBI:26271 (1)
CHEBI:15846 (1)
CHEBI:25094 (1)
CHEBI:17202 (1)
CHEBI:17858 (1)
CHEBI:16856 (1)
CHEBI:15978 (1)

Metabolite Name

Thymidine (5)
Hypoxanthine (5)
Hyodeoxycholic acid (4)
Lithocholic acid (4)
Benzoic acid (4)
Pantothenic acid (4)
Taurine (4)
Tauroursodeoxycholic acid (4)
4-Hydroxybenzaldehyde (4)
Glycocholic acid (4)
Isodeoxycholic acid (4)
Adenine (4)
Xanthine (4)
Inosine (4)
Histidine (3)
Glycodeoxycholic acid (3)
Allopurinol (3)
Ursocholic acid (3)
Chenodeoxycholic acid (3)
2-Hydroxy-2-methylbutyric acid (3)
5-Aminopentanoic acid (3)
3-Methyl-2-oxovaleric acid (3)
Cis-11-Eicosenoic acid (3)
Phthalic acid (3)
Levulinic acid (3)
Uracil (3)
Ursodeoxycholic acid (3)
Pyroglutamic acid (3)
Niacinamide (3)
Isolithocholic acid (3)

First Public Date

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2014 (30)
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2019 (18)
2018 (11)
2016 (9)
2015 (7)
2017 (5)

Study type

Transcription profiling by array (252)
RNA-seq of coding RNA (28)
ChIP-seq (24)
Transcription profiling by tiling array (10)
RNA-seq of coding RNA from single cells (6)
Unknown experiment type (5)
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Human - High-throughput sequencing (1)
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2011 (83)
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2005 (6)
2004 (6)
2003 (1)
2001 (1)

Lab affiliation

Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. (2)
Center for Translational and Clinical Research, Department of Proteomics, School of Medicine, University of Zagreb, Zagreb, Croatia Drago Perović Department of Anatomy, School of Medicine, University of Zagreb, Zagreb, Croatia (1)
Assistant Professor, Physiology and Pharmacology, University of Calgary, McCaig Insitute for Bone and Joint Health (1)
Department of Cell Biology and Physiology, Washington University in St. Louis, St. Louis, Missouri, USA (1)
Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine, 10115, Berlin, Germany (1)
Korea Research Institute of Chemical Technology (1)
Cell Signalling & Immunology, School of Life Sciences, Univeristy of Dundee (1)
Grupo de Investigación de Reumatología, INIBIC-Complejo Hospitalario Universitario de A Coruña, SERGAS, Departamento de Medicina Universidad de A Coruña, A Coruña, Spain (1)
University Hospital Essen (AÃ¶R) Institute for Transfusionmedicine Virchowstr. 179 D-45147 Essen (1)
Department of Orthopedics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province, 430030, PR China (1)
Nanjing University School of Life Sciences (1)
Peking university (1)
Proteomics Core Facility, Medical University of Vienna, Vienna, Austria (1)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (1)
Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (1)
Ri.MED Foundation (1)
1) Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal 2) Instituto de Engenharia Biomédica (INEB), Universidade do Porto, Porto, Portugal 3) Instituto de Ciências Biomédicas Abel Salazar (ICBAS), Universidade do Porto, Porto, Portugal (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Genome Biology Unit, EMBL Heidelberg (1)
Proteomics PLatform CIC bioGUNE Build. 800 Bizakaia Tech. Park Derio 48160 Spain (1)
Guangxi Key Laboratory of Oral and Maxillofacial Rehabilitation and Reconstruction (1)
Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Department of Molecular and Cellular Hemostasis, Sanquin Research Amsterdam, NL (1)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee (1)
Department of Cell Biology-Inspired Tissue Engineering, MERLN Institute for Technology-Inspired Regenerative Medicine, Maastricht University, Maastricht, The Netherlands. (1)
Tumour Host Interaction laboratory, The Francis Crick Institute, 1 Midland Road, NW1 1AT London (1)
Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
1. Ludwig Boltzmann Institute for Traumatology The research center in cooperation with AUVA, Donaueschingenstrasse 13, 1200 Vienna, Austria 2. Austrian Cluster for Tissue Regeneration, Donaueschingenstrasse 13, 1200 Vienna, Austria (1)
Centre for Regenerative Medicine (CRM), Institute for Regeneration and Repair (IRR), University of Edinburgh (1)

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Harnessing Exogenous Stimuli and Functionally 3D Aligned Fibrous Scaffolds for Spatiotemporal Modulation of Bone Regeneration

Bone regeneration requires spatiotemporal coordination of immune modulation, stem cell recruitment, angiogenesis, and osteogenesis, yet most scaffolds lack sequential control across healing phases. We develop a near-infrared (NIR)-responsive therapeutic platform that integrates clinically av...

2026-03-04 | MTBLS13974 | MetaboLights

Strontium chelate with Achyranthes bidentata polysaccharide as a carrier promotes bone regeneration through mediating gut-liver-bone axis: The TD chicken model

This study investigates the effect of Achyranthes bidentata polysaccharide-strontium (ABPS-Sr) chelate on tibial dyschondroplasia (TD) in broilers and its underlying mechanisms. TD is a prevalent leg disorder in commercial broilers characterized by reduced angiogenesis in the tibial growth plate ...

2025-09-25 | MTBLS13045 | MetaboLights

Strontium chelate with Achyranthes bidentata polysaccharide as a carrier promotes bone regeneration through mediating gut-liver-bone axis: The TD chicken model

2025-09-24 | MTBLS13038 | MetaboLights

Gut microbiota-derived deoxycholic acid promotes pancreatic regeneration following acute pancreatitis via Reg3a signaling pathway

Recovery from acute pancreatitis (AP) involves complex biological processes, and the mechanisms governing pancreatic repair remain unclear. In a clinical cohort during the recovery phase of AP, impaired pancreatic recovery was associated with intestinal dysbiosis, depletion of the microbial bile ...

2026-03-08 | MTBLS14000 | MetaboLights

Untargeted metabolites of supernatant of wild-type and Nlrp3-/- bone marrow-derived macrophages with or without LPS and ATP costimulation

Untargeted metabolites of supernatant of wild-type and Nlrp3-/- bone marrow-derived macrophages without stimulation or with 4 hours of LPS preconditioning and subsequently 30 min of ATP stimulation.

2025-07-08 | MTBLS12152 | MetaboLights

Sarcosine decreases in sarcopenia and enhances muscle regeneration and adipose thermogenesis by activating ant-inflammatory macrophages (cohort2)

Age-related changes in circulating metabolites significantly influence systemic physiology and may contribute to diseases like sarcopenia. Although metabolic dysregulation is closely linked to sarcopenia, the roles of specific metabolites remain unclear. Here we performed comprehensive plasma met...

2025-05-06 | MTBLS12036 | MetaboLights

Sarcosine decreases in sarcopenia and enhances muscle regeneration and adipose thermogenesis by activating ant-inflammatory macrophages (cohort1)

2025-05-06 | MTBLS12015 | MetaboLights

Transcriptome and secretome analysis of mechanically stretched osteocytic cells reveals activation of signalling pathways implicated in bone regeneration and DNA-repair systems

Osteocytes are secretory bone cells that can play an important role in regenerative rehabilitation through their secretome. Making use of RNA-seq and bioinformatics we examined the transcriptome of mouse and human osteocytic bone cells cultured under cyclic tension delivered by a computer-controlled...

ORGANISM(S): Mus musculus

2021-06-02 | E-MTAB-9487 | biostudies-arrayexpress

Transcription profiling time series of Danio rerio heart regeneration

Amputation of heart tissue followed by regeneration of the heart. Samples were taken at 0 hpa (hours post-amputation), 6 hpa, 12 hpa, 24 hpa, 3 dpa and 5 dpa.

ORGANISM(S): Danio rerio

2008-09-05 | E-MEXP-1239 | biostudies-arrayexpress

Differential microRNA Expression during Muscle Regeneration

MicroRNAs (miRNAs) are important in the regulation of many biological processes including muscle development. However, little is known regarding miRNA regulation of muscle regeneration. In mature murine tibialis anterior muscle following injury, 298 miRNAs were significantly changed during the time ...

ORGANISM(S): Mus musculus

2012-04-24 | E-GEOD-37479 | biostudies-arrayexpress

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