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TranscriptomicsComparative analysis of bacterial transcriptome using DNA microarray and next generation sequencing technologies
Validation of Lactobacillus plantarum WCFS1 transcriptome profile using RNA sequencing (direct cDNA sequencing and 3'-UTR sequencing) in comparison with DNA microarray as a reference platform. Transcriptome analysis was performed on total RNA and enriched mRNA of L. plantarum WCFS1 grown in CDM or M...
ORGANISM(S): Lactobacillus plantarum 
2012-07-09 | E-GEOD-35754 | biostudies-arrayexpress
ModelsHoefnagel2002_PyruvateBranches
This a model from the article: Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. Hoefnagel MH, Starrenburg MJ, Martens DE, Hugenholtz J, Kleerebezem M, Van Swam II, Bongers R, Westerh...
2024-09-02 | BIOMD0000000017 | BioModels
TranscriptomicsCarbohydrates Regulate Virulence Gene Expression in Streptococcus suis
Streptococcus suis is a major pig pathogen as well as an emerging zoonotic pathogen. Previous work has demonstrated that the S. suis extracellular amylopullulanase enzyme (ApuA) that degrades {alpha}-glucans also functions as an adhesin for porcine epithelial cells. To identify the mechanisms linkin...
ORGANISM(S): Streptococcus suis P1/7 
2014-03-18 | E-GEOD-40658 | biostudies-arrayexpress
TranscriptomicsLifestyle of lactobacillus plantarum in the mouse cecum
Lactobacillus plantarum is a common inhabitant of mammalian gastrointestinal tracts and specific strains belonging to this species are marketed as probiotics intended to confer beneficial health effects. To assist in determining the physiological status and host-microbe interactions of L. plantarum ...
ORGANISM(S): Lactobacillus plantarum WCFS1 
2008-07-31 | E-GEOD-11383 | biostudies-arrayexpress
TranscriptomicsGenome-wide prediction and validation of M-OM-^C70 promoters in Lactobacillus plantarum WCFS1
Background: In prokaryotes, sigma factors are essential for the targeting of the transcription machinery to promoters. Various sigma factors have been described that recognize and bind to specific DNA sequence motifs in promoter sequences. The canonical sigma factor M-OM-^C70 is commonly involved in...
ORGANISM(S): Lactobacillus plantarum WCFS1 
2012-03-28 | E-GEOD-36898 | biostudies-arrayexpress
TranscriptomicsCharacterization of the the L. plantarum capsular polysaccharide clusters
The bacterial cell envelope is a complex, multilayered structure that is not only essential to maintain cellular integrity, but also facilitates vital bacterial processes such as adaption, colonization and adhesion. Cell envelopes comprise a wide range of molecules, such as proteins and capsular pol...
ORGANISM(S): Lactobacillus plantarum 
2011-12-23 | E-GEOD-34690 | biostudies-arrayexpress
TranscriptomicsBatch wt vs hyper +_- pABA Normal int_Filtered fg-bg2
Transcriptional analysis upon the overexpression of the folate gene cluster on a high copy plasmid when compared to an empty vector in the lactic acid bacterium L. plantarum. The transcriptional response was determined for both strains in the presence and absence of pABA thereby using the hybridisat...
ORGANISM(S): Lactobacillus plantarum 
2008-05-31 | E-GEOD-8956 | biostudies-arrayexpress
TranscriptomicsControl vs hyper; 25 mM glucose_Filtered fb-bg
Transcriptional analysis upon the overexpression of the folate gene cluster on a high copy plasmid when compared to an empty vector in the lactic acid bacterium L. plantarum. The transcriptional response was determined for both strains in continuous culture in the presence of glucose thereby using t...
ORGANISM(S): Lactobacillus plantarum 
2010-05-14 | E-GEOD-9392 | biostudies-arrayexpress
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