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Unknown (6100)
Proteomics (125)
Genomics (32)
Transcriptomics (15)
Metabolomics (7)
Genomic (1)
Clinical (1)
Other (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (123)
Allexis (123)
Canis lupus familiaris (123)
Carya cathayensis (123)
Clostridioides difficile 630 (123)
Cyanophora paradoxa (123)
Ensifer adhaerens (123)
Enterococcus faecalis (123)
Globicatella sanguinis (123)
Histomonas meleagridis (123)
Human immunodeficiency virus 1 (123)
Leishmania major strain Friedlin (123)
Listeria monocytogenes (123)
Lotus japonicus (123)
Marchantia polymorpha (123)
Methylohalobius crimeensis 10Ki (123)
Mus musculus (123)
Mycobacterium tuberculosis (123)
Ophrys garganica (123)
Ophrys sphegodes (123)
Physcomitrium patens (123)
Pseudomonas aeruginosa SJTD-1 (123)
Pseudomonas putida KT2440 (123)
Mus musculus (8)
Drosophila melanogaster (4)
Homo sapiens (4)
Coprinopsis cinerea (1)
Bacillus subtilis (1)
Staphylococcus aureus (1)
Rattus norvegicus (1)

Organisms

Mus musculus (9)
Staphylococcus aureus (7)
Homo sapiens (4)
Staphylococcus xylosus (1)
Staphylococcus argenteus (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)

Repository

pride (123)
ENA (27)
biostudies-arrayexpress (20)
MetaboLights (6)
dbGaP (1)
GNPS (1)
GPMDB (1)
MassIVE (1)
PAXDB (1)

Tissue

Cell culture (21)
Brain (10)
Epithelial cell (9)
Fibroblast (8)
Permanent cell line cell (4)
Sperm (4)
Liver (3)
Macrophage (3)
Root (3)
Testis (3)
Cell suspension culture (2)
Early embryonic cell (2)
Hepatocyte (2)
Monocyte (2)
Oligodendrocyte precursor cell (2)
Pancreas (2)
Primary cell (2)
Stromal cell of bone marrow (2)
Bile (1)
Blood plasma (1)
Blood platelet (1)
Bone marrow cell (1)
Brain myelin (1)
Bronchoalveolar lavage (1)
Cerebellar granule cell (1)
Colostrum (1)
Culture fluid (1)
Epithelial cell of cervix (1)
Femur (1)
Glial cell (1)

Disease

Disease free (2)
Lysosomal storage disease (2)
Male infertility (2)
Pancreatic ductal adenocarcinoma (2)
Prostate carcinoma (1)
Caecum (1)
Not Available (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Chronic leukemia (1)
Hereditary spastic paraplegia 35 (1)
Infertility (1)
Metachromatic leukodystrophy (1)
Neuroblastoma (1)
Neuronal ceroid lipofuscinosis 6 (1)
Niemann-Pick disease type C1 (1)
Prolymphocytic leukemia (1)
Renal clear cell carcinoma (1)

Technology Type

Mass Spectrometry (123)
Shotgun proteomics (75)
Bottom-up proteomics (19)
Gel-based experiment (16)
Data-independent acquisition (14)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-dependent acquisition (9)
SRM/MRM (5)
SWATH MS (4)
Mass spectrometry (3)
Top-down proteomics (3)
Mass spectrometry assay (2)
All-ion fragmentation (2)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Flow injection analysis MS - negative (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
MicrOTOF-Q II (1)
Instrument (1)
Enriched phosphopeptides were loaded onto a 50 cm EN C18 PepMap column with elution over a 1 h acquisition driven by a Waters mClass nanoUPLC. Eluted peptides were measured using a Thermo Orbitrap Fusion Tribrid mass spectrometer, with MS spectra acquired in the Orbitrap and MS2 spectra acquired in parallel, following HCD fragmentation, in the linear ion trap. (1)
AccuTOF GC (Jeol) (1)
Varian two-channel VNMRS 600 MHz NMR spectrometer (1)

Publication Date

2022 (25)
2026 (17)
2023 (16)
2025 (15)
2021 (15)
2018 (12)
2020 (10)
2019 (8)
2024 (8)
2015 (7)
2017 (5)
2016 (4)
2014 (3)
2010 (3)
2011 (2)
2009 (1)
2008 (1)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
2A5A_MOUSE (1)
2A5E_MOUSE (1)
2A5G_MOUSE (1)
2AAA_MOUSE (1)
2ABA_MOUSE (1)
3HIDH_MOUSE (1)
4F2_MOUSE (1)
6PGD_MOUSE (1)
6PGL_MOUSE (1)
AAK1_MOUSE (1)
AATC_MOUSE (1)
AATM_MOUSE (1)
ABCB7_MOUSE (1)
ABCE1_MOUSE (1)
ABD12_MOUSE (1)
ABHD6_MOUSE (1)
ABI1_MOUSE (1)
ABLM1_MOUSE (1)
ABLM2_MOUSE (1)
ABR_MOUSE (1)
ACACA_MOUSE (1)
ACAD9_MOUSE (1)
ACADL_MOUSE (1)
ACADM_MOUSE (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:18012 (3)
CHEBI:30769 (3)
CHEBI:17482 (2)
CHEBI:20392 (2)
CHEBI:16856 (2)
CHEBI:16695 (2)
CHEBI:15729 (2)
CHEBI:16977 (2)
CHEBI:17148 (2)
CHEBI:16958 (2)
CHEBI:1148 (2)
CHEBI:16865 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:17568 (2)
CHEBI:17750 (2)
CHEBI:16467 (2)
CHEBI:18019 (2)
CHEBI:17203 (2)
CHEBI:18050 (2)
CHEBI:15971 (2)
CHEBI:16995 (2)
CHEBI:16857 (2)
CHEBI:17053 (2)
CHEBI:16015 (2)
CHEBI:32816 (2)
CHEBI:30887 (2)
CHEBI:16027 (2)

Metabolite Name

Histidine (3)
Glutamate (3)
Aspartate (3)
Glycine (3)
Acetamide (3)
Thymine (3)
Ornithine (3)
Carnitine (3)
Pyridoxine (3)
Isophorone (3)
Nicotinate (3)
Arginine (3)
Tyramine (3)
Lactate (3)
Asparagine (3)
Tyrosine (3)
Serine (3)
Guanine (3)
Alanine (3)
Threonine (3)
Succinate (3)
Proline (3)
Phenylalanine (3)
Glutamine (3)
Fumarate (3)
Pyridoxal (3)
Xanthine (3)
Tryptophan (3)
GDP-hexose (2)
C28:3 (2)

First Public Date

2024 (5)
2014 (5)
2023 (3)
2022 (3)
2021 (3)
2020 (3)
2026 (2)
2025 (1)
2017 (1)
2016 (1)

Classification

bacteria (8)

Modification

4x(15)N labeled L-arginine (2)
2x(15)N labeled L-lysine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (4)
ChIP-seq (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
Observational (1)

Release Date

2022 (694)
2025 (685)
2021 (668)
2023 (623)
2024 (577)
2020 (441)
2019 (395)
2018 (289)
2017 (268)
2016 (261)
2015 (261)
2014 (215)
2013 (143)
2026 (119)
2012 (109)
2011 (108)
2010 (79)
2009 (64)
2008 (32)
2007 (24)
2006 (20)
2005 (13)
2003 (9)
2002 (6)
2001 (4)
2000 (4)
1999 (4)
2004 (3)
1998 (2)

Lab affiliation

University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (4)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (4)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (3)
Institute for Biochemistry and Molecular Biology, Medical Faculty, University of Bonn, 53115 Bonn, Germany (3)
1. Department I of Internal Medicine, Center for Integrated Oncology (CIO), Aachen-Bonn- Cologne-Duesseldorf, Excellence Cluster for Cellular Stress Response and Aging-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne (UoC), 50937 Cologne, Germany 2. Department of Hematology and Cellular Therapy, University of Leipzig, Leipzig, Germany (2)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany (2)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (2)
Department of Neuro- and Sensory Physiology University Medical Center Göttingen Humboldtallee 23 37073 Göttingen (2)
Institute for Biochemistry and Molecular Biology, University of Bonn (2)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Theodor-Stern-Kai 7, D-60590 Frankfurt am Main, Germany (2)
Institute of Biochemistry II, University Hospital, Goethe University, Frankfurt, Germany (2)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Germany (2)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (2)
Institute of Microbiology, University of Greifswald, Felix-Hausdorff-Strasse 8, 17489 Greifswald, Germany (2)
Institute of Molecular Medicine and Experimental Immunology, BMZ-II, Building 12, University Hospital Bonn (2)
University of Bonn, Germany (2)
AK Becker, Institut für Biochemie und Molekularbiologie (IBMB), Med. Fak. Universtität Bonn, Nussallee 11, 53115 Bonn, Germany (1)
AK Gieselmann Institut für Biochemie und Molekularbiologie (IBMB) Med. Fak. Universtität Bonn Nussallee 11 53115 Bonn Germany (1)
Center for Physiology and Pathophysiology, Institute of Vegetative Physiology, University of Köln, Köln, Germany Cologne Excellence Cluster on Cellular Stress Responses in Aging-associated Diseases (CECAD), University of Cologne, Cologne, Germany (lab head) (1)
College of Biology and the Environment, Nanjing Forestry University (1)
Department of Animal Reproduction, Spanish National Institute for Agricultural and Food Research and Technology (INIA), Avda. Puerta de Hierro km 5.9, 28040 Madrid, Spain. (1)
Department of Developmental Pathology and Department of Molecular Diagnostics Institute of Pathology Bonn Medical School Venusberg-Campus 1, Building 62 53127 Bonn (1)
Department of Developmental Pathology, Institute of Pathology, University Hospital Bonn, 53127 Bonn, Germany (1)
Department of Developmental Pathology, Institute of Pathology, University Hospital Bonn, Germany (1)
Department of Internal Medicine I, Center of IntegratedOncology, Cologne-Bonn Cologne Excellence Cluster on Cellular Stress Response in Aging-Associated Diseases (CECAD), University of Cologne (1)
Department of Microbial Proteomics, Institute for Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, D-17489 Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Germany (1)

Location

Germany (1)

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Comparative analysis of ChAdOx1 nCoV-19 and Ad26.COV2.S SARS-CoV-2 vector vaccines

Vector-based SARS-CoV-2 vaccines such as AstraZeneca's ChAdOx1 nCoV-19 have been associated with vaccine-induced thrombosis (TTS/VITT). We studied ChAdOx1 nCov-19 (AstraZeneca) and Ad26.COV2.S (Johnson & Johnson) and compared the vaccines using proteomics with mass spectrometric measurements. We cou...

ORGANISM(S): Homo sapiens (Human)

2023-05-04 | PXD027344 | Pride

Strategies towards Targeting Gαi/s Proteins: Scanning of Protein-Protein Interaction Sites To Overcome Inaccessibility.

Not available

S-EPMC8252600 | biostudies-literature

Elucidating the Linezolid response of Staphylococcus aureus USA300 (Hi3 quantification)

The translation inhibitor Linezolid is an important antibiotic of last resort against multiresistant gram-positive pathogens including MRSA. Linezolid is reported to specifically inhibit extracellular virulence factors, but the molecular cause is unknown. To elucidate the physiological response of S...

ORGANISM(S): Staphylococcus aureus

2016-03-18 | PXD001659 | Pride

Linezolid Absolute quantification

Pretreatment human immunodeficiency virus type 1 (HIV-1) drug resistance in transmission clusters of the Cologne-Bonn region, Germany.

Not available

S-EPMC6349503 | biostudies-literature

Five years calibrated observations from the University of Bonn X-band weather radar (BoXPol).

Not available

S-EPMC9458657 | biostudies-literature

Elucidating the Linezolid response of Staphylococcus aureus USA300 (metabolic labelling)

ORGANISM(S): Staphylococcus aureus (strain USA300)

2016-03-18 | PXD001622 | Pride

Metabolic labelling Linezolid Transertion Staphylococcus aureus

Intermolecular carbene S-H insertion catalysed by engineered myoglobin-based catalysts†.

Not available

S-EPMC4474517 | biostudies-literature

Hotspots of Transmission Driving the Local Human Immunodeficiency Virus Epidemic in the Cologne-Bonn Region, Germany.

Not available

S-EPMC6481988 | biostudies-literature

Staphylococcus aureus isolates from the gut and the blood are ‘separated’ by host barrier integrity

The opportunistic pathogen Staphylococcus aureus is carried asymptomatically by about one-third of the human population. Body sites known to be colonized by S. aureus are the skin, nasopharynx and gut. In particular, the mechanisms that allow S. aureus to pass the gut epithelial barrier and to invad...

ORGANISM(S): Staphylococcus aureus

2023-03-11 | PXD030971 | Pride

S. aureus gut colonization bacteremia wgs proteome barrier

Association of COMT genotypes with S-COMT promoter methylation in growth-discordant monozygotic twins and healthy adults.

Not available

S-EPMC3270002 | biostudies-literature

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6282 Results

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