Braga M M - OmicsDI

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Unknown (1497)
Proteomics (53)
Genomics (13)
Transcriptomics (11)
Metabolomics (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (51)
Andropogon gerardi (51)
Bacteria (51)
Bartonella quintana JK 31 (51)
Canis lupus familiaris (51)
Cnidaria (51)
Ectopseudomonas oleovorans CECT 5344 (51)
Ensifer adhaerens (51)
Halictus scabiosae (51)
Human immunodeficiency virus 1 (51)
Mesocricetus auratus (51)
Miscanthus x giganteus (51)
Morchella importuna (51)
Mus musculus (51)
Panicum virgatum (51)
Pseudomonas aeruginosa PA103 (51)
Pseudomonas aeruginosa SJTD-1 (51)
Rabies virus Nishigahara RCEH (51)
Rattus norvegicus (51)
Rattus rattus (51)
Rhodococcus jostii RHA1 (51)
Rhodopseudomonas palustris (51)
Shigella (51)
Homo sapiens (18)
Mus musculus (3)
Macaca mulatta (1)
Bos indicus (1)
Sus scrofa (1)
Grapevine leafroll-associated virus (1)
Vitis vinifera (1)

Repository

pride (51)
EGA (13)
biostudies-arrayexpress (11)
GNPS (1)
MassIVE (1)
MetaboLights (1)
PanoramaPublic (1)

Tissue

Cell culture (9)
Blood plasma (4)
Brain (2)
Fibroblast (2)
Permanent cell line cell (2)
Venom (2)
Blood cell (1)
Bone marrow (1)
Breast cancer cell line (1)
Cerebellar cortex (1)
Craniofacial region (1)
Embryonic kidney cell line (1)
Growth phase culture (1)
HEK-293 cell (1)
Hair (1)
Leaf (1)
Liver (1)
Lung (1)
Mesenchymal stem cell of the bone marrow (1)
Metacestode (1)
Myeloblast (1)
Myeloid cell (1)
Neural cell (1)
Pancreas (1)
Plant cell (1)
Prostate cancer cell line (1)
Skin (1)
Stationary phase culture (1)
Stem cell (1)
Urinary bladder (1)

Disease

Disease free (2)
Trypanosomiasis (2)
Acute myeloid leukemia (1)
Alveolar echinococcosis (1)
Alveolar rhabdomyosarcoma (1)
Bacterial sepsis (1)
Breast cancer (1)
Embryonal rhabdomyosarcoma (1)
Giardiasis (1)
Leishmaniasis (1)
Myeloma (1)
Pancreatitis (1)
Rhabdomyosarcoma (1)
Vulvovaginal candidiasis (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (31)
Illumina 15K (8)
Gel-based experiment (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (6)
Data-dependent acquisition (4)
MSE (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (2)
Becton Dickinson INFLUX (1)
Xevo TQ-S (1)
Q Exactive Plus (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2022 (11)
2023 (9)
2019 (7)
2018 (6)
2024 (6)
2021 (6)
2026 (6)
2025 (6)
2015 (2)
2013 (2)
2020 (2)
2012 (1)
2010 (1)
2016 (1)

CHEBI ID

CHEBI:71847 (1)
CHEBI:156118 (1)
CHEBI:71750 (1)
CHEBI:71749 (1)
CHEBI:71743 (1)
CHEBI:134435 (1)
CHEBI:136196 (1)
CHEBI:66865 (1)
CHEBI:66860 (1)
CHEBI:134648 (1)
CHEBI:71712 (1)
CHEBI:156044 (1)
CHEBI:134270 (1)
CHEBI:71731 (1)
CHEBI:64424 (1)
CHEBI:85700 (1)
CHEBI:71736 (1)
CHEBI:71735 (1)
CHEBI:71734 (1)
CHEBI:66859 (1)
CHEBI:64423 (1)
CHEBI:64517 (1)
CHEBI:66849 (1)
CHEBI:66850 (1)

Metabolite Name

PE-NMe (44:4) (1)
PE-NMe(42:4) (1)
Phosphatidylinositol (P-36:5) (1)
Ganglioside GM3 (36:2) (1)
Phosphatidic acid (P-36:3) (1)
Cardiolipin 78:13(2-) (1)
Cardiolipin 78:11(2-) (1)
CL(79:2) (1)
Phosphatidylethanolamine 40:3 zwitterion (1)
Phosphatidylethanolamine 36:5 zwitterion (1)
Phosphatidylethanolamine 32:1 zwitterion (1)
Phosphatidylethanolamine 42:2 (1)
PE-NMe(36:4) (1)
Phosphatidylglycerol 32:1(1-) (1)
CL(73:0) (1)
Phosphatidylserine 40:1(1-) (1)
Cardiolipin 78:14(2-) (1)
Phosphatidylinositol 42:6(1-) (1)
PG(O-34:0) (1)
Phosphatidylethanolamine 42:3 zwitterion (1)
Cardiolipin 76:10(2-) (1)
Phosphatidylethanolamine 38:2 zwitterion (1)
PE(39:0) (1)
PE-NMe(42:1) (1)
CL(74:0) (1)
Cardiolipin 72:8(2-) (1)
Phosphatidylethanolamine O-36:1 zwitterion (1)
Phosphatidylethanolamine 38:4 (1)
CL(78:0) (1)
Phosphatidylethanolamine P-36:5 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (4)
Human - Two-color microarray (1)
Human - Single-cell sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (203)
2021 (194)
2025 (180)
2023 (177)
2024 (137)
2020 (129)
2019 (93)
2018 (90)
2016 (54)
2017 (53)
2015 (50)
2014 (45)
2013 (26)
2026 (20)
2012 (17)
2011 (9)
2010 (7)
2009 (7)
2008 (6)
2007 (5)
2006 (2)
2003 (2)
2005 (1)
2002 (1)

Lab affiliation

Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (2)
Institute of Parasitology, University of Bern, Switzerland (2)
Life and Health Sciences Research Institute (ICVS), Medical School, University of Minho, Braga, Portugal (2)
Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, UK (1)
Centre of Biological Engineering (CEB), University of Minho, Braga, Portugal (1)
Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Braga, Portugal (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
Clinical Diagnostic Laboratory, Department of Clinical Veterinary Medicine, Vetsuisse Faculty, University of Bern, Bern, Switzerland. (1)
DCR (1)
Departamento de Fisiologia e Biofisica, Universidade Federal de Minas Gerais (1)
Departement for Biomedical Research University of Bern Switzerland (1)
Department for BioMedical Research (DBMR), University of Bern, 3008 Bern, Switzerland (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Department of Chemistry and Biochemistry University of Bern Switzerland (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland (1)
Department of Chemistry, Federal University of São Carlos, 13565-905 São Carlos, SP, Brazil (1)
Department of Hematology and Central Hematology Laboratory, Inselspital, Bern University Hospital, University of Bern, Switzerland Department for BioMedical Research (DBMR), University of Bern, Switzerland (1)
Department of Morphology, Cell and Molecular Biology Laboratory (LBCM),Biological Sciences Institute (ICB), Federal University of Minas Gerais (UFMG), Brazil (1)
Department of Oral Surgery and Pathology, School of Dentistry, Federal University of Minas Gerais (1)
Department of Parasiology, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil. (1)
Department of Physiology and Biophysics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil. (1)
Dept. of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Switzerland (1)
Division of Pediatric Hematology and Oncology, Department of Pediatrics, Inselspital, Bern University Hospital, University of Bern, Switzerland (1)
Federal University of Minas Gerais (1)
Functional Urology Research Lab, DBMR, University of Bern, 3008 Bern, Switzerland (1)
Glycoproteomics laboratory (1)
Institut für Tierpathologie (ITPA) Vetsuisse University of Bern Länggassstrasse 122 3001 Bern (1)
Institute of Animal Pathology, Vetsuisse, 3012 Bern, Switzerland Bern Center for Precision Medicine, University of Bern, 3012 Bern, Switzerland (1)
Institute of Cell Biology University of Bern (1)
Institute of Cell Biology University of Berne Baltzerstrasse 4 CH-3012 Berne, Switzerland (1)

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Identification of the Bacterial Pathogens in Children with Otitis Media: A Study in the Northwestern Portuguese District of Braga.

Not available

S-EPMC8779683 | biostudies-literature

The Mitochondrial Calcium Uniporter controls skeletal muscle mass in vivo

Muscle atrophy contributes to the poor prognosis of many physiopathological conditions, but pharmacological therapies are still limited. Muscle activity leads to major swings in mitochondrial [Ca2+] which control aerobic metabolism, cell death and survival pathways. We have investigated in vivo the ...

ORGANISM(S): Mus musculus

2015-03-05 | E-GEOD-60931 | biostudies-arrayexpress

Involvement of coenzyme M during aerobic biodegradation of vinyl chloride and ethene by Pseudomonas putida strain AJ and Ochrobactrum sp. strain TD.

Not available

S-EPMC1472362 | biostudies-literature

Trends in activity for the oxygen evolution reaction on transition metal (M = Fe, Co, Ni) phosphide pre-catalysts.

Not available

S-EPMC5934697 | biostudies-literature

Cardiomyocyte-myofibroblast contact dynamism is modulated by connexin-43.

Not available

S-EPMC6704460 | biostudies-literature

Adaptation and validation of the modified weight bias internalization scale (WBIS-M) in Brazilian adults

Not available

S-EPMC12312967 | biostudies-literature

Effector memory CD4(+) T cells are associated with cognitive performance in a senior population.

Not available

S-EPMC4277304 | biostudies-literature

Changes in lipid profiles of epileptic mouse model

INTRODUCTION: Approximately 1% of the world's population is impacted by epilepsy, a chronic neurological disorder characterized by seizures. One-third of epileptic patients are resistant to AEDs, or have medically refractory epilepsy (MRE). One non-invasive treatment that exists...

2022-01-06 | MTBLS1432 | MetaboLights

Hospital-Based Genomic Surveillance of <i>Klebsiella pneumoniae</i>: Trends in Resistance and Infection.

Not available

S-EPMC12731027 | biostudies-literature

Extracellular Vesicles of Minimalistic Mollicutes as Mediators of Immune Modulation and Horizontal Gene Transfer

Extracellular vesicles (EVs) are central components of bacterial secretomes, including the small, cell wall-less Mollicutes. Although EV release in Mollicutes has been reported, EV proteomic composition and function have not been explored yet. We developed a protocol for isolating EVs of the pathog...

ORGANISM(S): Mycoplasmopsis bovis Mycoplasma mycoides

2025-05-07 | PXD061464 | Pride

Mycoplasma Extracellular vesicles

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1576 Results

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INTRODUCTION: Approximately 1% of the world's population is impacted by epilepsy, a chronic neurological disorder characterized by seizures. One-third of epileptic patients are resistant to AEDs, or have medically refractory epilepsy (MRE). One non-invasive treatment that exists...

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