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TranscriptomicsTranscription profiling by high throughput sequencing of six tissues of Brassica rapa
Deep sequencing of mRNA from six different tissues Analysis of poly(A)+ RNA of multiple different tissues of Brassica rapa containing Callus, Root, Stem, Leaf, Flower and Silique.
ORGANISM(S): Brassica rapa 
2013-10-09 | E-GEOD-43245 | biostudies-arrayexpress
TranscriptomicsExpression profile of trace metal element responsive genes in Brassica rapa
Purpose: Zinc deficiency (ZnD) and iron deficiency (FeD), excess Zn (ZnE) and cadmium exposure (CdE) are major environmental problems for crop cultivation. Methods: Applying Tag-Seq technology to leaves of Brassica rapa grown under FeD, ZnD, ZnE or CdE conditions, with normal conditions as a control...
ORGANISM(S): Brassica rapa 
2014-09-30 | E-GEOD-55264 | biostudies-arrayexpress
TranscriptomicsBrassica rapa subsp. chinensis Transcriptome
Deep RNA-Seq of two Brassica rapa genotypes—R500 (var. trilocularis, Yellow Sarson) and IMB211 (a rapid cycling variety)—using eight different tissues (root, internode, leaf, petiole, apical meristem, floral meristem, silique, and seedling) grown across three different environments (growth chamber, ...
ORGANISM(S): Brassica rapa subsp. chinensis 
2013-05-01 | E-MTAB-4192 | biostudies-arrayexpress
TranscriptomicsGenome annotation improvement of Brassica rapa
The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation. In this study, deep transcriptome RNA sequencing (RNA-Seq) of Brassica rapa was undertaken wi...
ORGANISM(S): Brassica rapa 
2014-04-22 | E-MTAB-4276 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Brassica rapa leaves elicited with either Pseudomonas syringae pv. maculicola or flg22
Phytoalexins are abundant in edible crucifers and have important biological activities, yet no dedicated gene for their biosynthesis is known. Here, we report two new cytochromes P450 from the non-model plant Brassica rapa (Chinese cabbage) that catalyze unprecedented S-heterocyclizations in cyclobr...
ORGANISM(S): Brassica rapa subsp. pekinensis 
2015-09-21 | E-GEOD-69785 | biostudies-arrayexpress
TranscriptomicsChloroplast-genome-wide maps of small RNAs in Chinese cabbage (Brassica rapa) and Arabidopsis thaliana (Ler).
Deep sequencing provided evidence that a novel subset of small RNAs were derived from the chloroplast genome of Chinese cabbage (Brassica rapa) and Arabidopsis (Ler). The chloroplast small RNAs (csRNAs) include those derived from mRNA, rRNA, tRNA and intergenic RNA. The rRNA-derived csRNA were prefe...
ORGANISM(S): Brassica rapa subsp. chinensis 
2012-03-30 | E-GEOD-28281 | biostudies-arrayexpress
TranscriptomicsExpression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies
The aim of this study was to identify eQTL in Brassica rapa grown under altered soil phosphorus (P) supply, to understand better the genetic architecture of P-use efficiency (PUE) in plants. Recombinant inbred lines (RILs) of the BraIRRI mapping population were grown at adequate and growth-limiting ...
ORGANISM(S): Brassica rapa 
2011-06-29 | E-GEOD-27052 | biostudies-arrayexpress
TranscriptomicsBrassica rapa chinensis MeJA
Transcription profiling by array of 10 days old Brassica rapa ssp. chinensis seedlings treated with 2mM methyl jasmonate by spraying and harvesting 48 hours past treatment
ORGANISM(S): Brassica rapa ssp. chinensis 
2015-01-24 | E-MTAB-2386 | biostudies-arrayexpress
TranscriptomicsComprehensive analysis of genic male sterility-related genes in Brassica rapa using Brassica rapa 300k microarray v2.0
To identify genes associated with genic male sterility (GMS) that could be useful for hybrid breeding in Chinese cabbage (Brassica rapa ssp. pekinensis), floral bud transcriptome analysis was carried out using a B. rapa microarray with 300,000 probes (Br300K). Among 47,548 clones deposited on a Br30...
ORGANISM(S): Brassica rapa subsp. pekinensis 
2013-10-22 | E-GEOD-47665 | biostudies-arrayexpress
TranscriptomicsElucidation of stress memory inheritance through epigenome alterations in Brassica rapa plants [RNA-seq]
In the current study we have profiled changes in the transcriptome of somatic and reproductive tissues of B.rapa plants following heat shock stress exposure. For this we used Illumina GAIIx platform. We have demonstrated that the highest tissue-specific alterations in the transcriptome profile are d...
ORGANISM(S): Brassica rapa 
2014-12-04 | E-MTAB-4131 | biostudies-arrayexpress
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