Braun David D - OmicsDI

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Unknown (50)
Transcriptomics (15)
Genomics (3)
Proteomics (3)
Metabolomics (2)

Organisms

Homo sapiens (7)
Mus musculus (6)
Candida albicans (3)
Ambystoma mexicanum (1)
Escherichia coli ETEC H10407 (1)
Oryctolagus cuniculus (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (16)
EGA (2)
MetaboLights (2)
pride (2)
MassIVE (1)

Tissue

Liver (2)

Disease

Medulloblastoma (1)

Technology Type

Mass spectrometry (2)
Mass Spectrometry (2)
Bottom-up proteomics (1)
Shotgun proteomics (1)

Instrument Platform

NextSeq 2000 (1)
Illumina HiSeq 2000 (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (4)
2011 (3)
2008 (3)
2014 (2)
2026 (1)
2016 (1)
2009 (1)
2007 (1)
2019 (1)
2025 (1)
2023 (1)
2024 (1)
2022 (1)

CHEBI ID

CHEBI:28088 (1)

Metabolite Name

(+)-(1R,2R)-1,2-Diphenylethane-1,2-diol (1)
(+)-Catechin (1)
(+)-Khusitene (1)
(+)-Rutin (1)
(+)-Sesamin (1)
(+/-)-Altenuene (1)
(+/-)-Naringenin (1)
(-)-Epicatechin (1)
(-)-Epicatechin gallate (1)
(-)-Ganotheaecolumol A (1)
(-)-Maackiain-3-sulfate (1)
(-)-Wikstromol (1)
(-)-trans-Carveol (1)
(1-Butanoyl-4,5,8-trihydroxy-7-methoxy-9,10-dioxo-9,10-dihydroanthracen-2-yl)oxidanesulfonic acid (1)
(1R,2R,4aR,8aS)-1-[2-(Furan-3-yl)ethyl]-2,4a,5-trimethyl-2,3,4,7,8,8a-hexahydronaphthalene-1-carboxylic acid (1)
(2-Acetyl-5-methoxyphenyl)oxidanesulfonic acid (1)
(2-{9-Hydroxy-2-oxo-2H,8H,9H-furo[2,3-h]chromen-8-yl}-2-[(3-methylbut-2-enoyl)oxy]propoxy)sulfonic acid (1)
(2E)-3-[4-(Sulfooxy)phenyl]prop-2-enoic acid (1)
(2E,9R)-9-Hydroxydec-2-enoic acid (1)
(2R)-2-[(R)-[[(6R)-6-Amino-6-carboxyhexanoyl]amino]-carboxymethyl]-5-methylidene-2H-1,3-thiazine-4-carboxylic acid (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2R,3S,4R)-2-(Hydroxymethyl)-5-(1,3-thiazol-2-yl)oxolane-3,4-diol (1)
(2S)-2-Amino-3-(2-ethylideneimidazol-4-ylidene)propanoic acid (1)
(2S)-2-Amino-6-[[(2R,3R,4R,5S,6R)-2,4,5-trihydroxy-6-(phosphonooxymethyl)tetrahydropyran-3-yl]amino]hexanoic acid (1)
(2S)-4-[(E)-2-[2-(3,4-Dihydroxyphenyl)ethylamino]vinyl]-2,3-dihydropyridine-2,6-dicarboxylate (1)
(3Z,6E)-3,6-bis(Methoxyimino)hexane-1,2,4,5-tetrol (1)
(5,6-Dihydroxy-1-methylcyclohexa-2,4-dien-1-yl)-hydrogen sulfate (1)
(6E)-3,7-Dimethyl-6-octene-1,8-dioic acid (1)
(6R,7R)-7-[[(Z)-2-(2-Amino-1,3-thiazol-4-yl)-4-carboxybut-2-enoyl]amino]-3-ethenyl-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid (1)
(9Z,11S,16S)-1-Acetoxy-9,17-octadecadiene-12,14-diyne-11,16-diol (1)

Study type

Transcription profiling by array (13)
Genotyping by array (1)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2021 (8)
2022 (7)
2025 (6)
2013 (5)
2016 (4)
2014 (4)
2011 (4)
2008 (4)
2023 (4)
2024 (3)
2020 (3)
2019 (3)
2017 (3)
2010 (3)
2026 (2)
2009 (1)
2007 (1)
2012 (1)

Lab affiliation

Department of Radiology Charité - Universitätsmedizin Berlin Charitéplatz 1 10117 Berlin Germany (1)
German Institute of Human Nutrition Potsdam-Rehbruecke (DIfE), Department of Molecular Toxicology, Nuthetal, Germany (1)

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Next-generation biomonitoring of the early-life chemical exposome in neonatal and infant development

Exposure to synthetic and natural chemicals is a major environmental risk factor in the etiology of many chronic diseases. Investigating complex co-exposures is necessary for a holistic assessment in exposome-wide association studies. In this work, a sensitive liquid chromatography-tandem mass sp...

2023-10-26 | MTBLS2442 | MetaboLights

SP-D Serum Levels Reveal Distinct Epithelial Damage in Direct Human ARDS.

Not available

S-EPMC7917979 | biostudies-literature

Expression data for human retinal pigment epithelium (RPE)/choroid - early age-related macular degeneration (AMD) and control samples

Purpose: Age-related degeneration (AMD) is a major cause of blindness in developed countries. The molecular pathogenesis of early events in AMD is poorly understood. We investigated differential gene expression in samples of human retinal pigment epithelium (RPE)/choroid from early AMD and control m...

ORGANISM(S): Homo sapiens

2013-12-23 | E-GEOD-50195 | biostudies-arrayexpress

MicroRNA-155 promotes autoimmune inflammation by enhancing inflammatory T cell development.

Not available

S-EPMC2966521 | biostudies-literature

Insights into the early-life chemical exposome of Nigerian infants and potential correlations with the developing gut microbiome

Early-life exposure to natural and synthetic chemicals can impact acute and chronic health conditions. Here, a suspect screening workflow anchored on high-resolution mass spectrometry was applied to elucidate xenobiotics in breast milk and matching stool samples collected from Nigerian mother-inf...

2025-08-07 | MTBLS8792 | MetaboLights

Microbiota-Dependent Upregulation of Bitter Taste Receptor Subtypes in the Mouse Large Intestine in High-Fat Diet-Induced Obesity.

Not available

S-EPMC10574285 | biostudies-literature

An Integrated Multi-Omic Approach to Assess Radiation Injury on the Host-Microbiome Axis.

Not available

S-EPMC5304359 | biostudies-literature

Gene Array Analyzer (GAA): Alternative usage of gene arrays to study alternative splicing events (MoEx array)

The latest version of microarrays released by Affymetrix, the GeneChip Gene 1.0 ST Arrays (gene arrays), are designed in a similar fashion as exon arrays, which enables to identify differentially expressed exons, rather than only the expression level of whole transcripts. Here, we propose an extensi...

ORGANISM(S): Mus musculus

2011-11-28 | E-GEOD-32998 | biostudies-arrayexpress

Gene Array Analyzer (GAA): Alternative usage of gene arrays to study alternative splicing events (MoGene array)

ORGANISM(S): Mus musculus

2011-11-28 | E-GEOD-30429 | biostudies-arrayexpress

Systemic control of plasmacytoid dendritic cells by CD8+ T cells and commensal microbiota.

Not available

S-EPMC3439147 | biostudies-literature