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ProteomicsCharacterization of Plasma Membrane Proteins in Stylosanthes Leaves and Roots Using Simplified Enrichment Method
Plant plasma membranes (PMs) play an important role in maintaining the stability of the intracellular environment and exchanging information with the external environment. Therefore, deciphering dynamics of PM proteome provides crucial information for elucidating cellular regulation in response to d...
ORGANISM(S): Stylosanthes guianensis 
2022-12-14 | PXD037423 | Pride
Proteomics Plasma membrane Brij-58 treatment Protein enrichment Stylosanthes 
GenomicsThe short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [I]
The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [I]
PRJNA792079 | ENA
ProteomicsGel based and gel-free search for plasma membrane proteins in chickpea (Cicer arietinum L.) augments the comprehensive data sets of membrane protein repertoire
Plasma membrane (PM) encompasses total cellular contents, serves as a living barrier regulates all cellular exchanges in a spatiotemporal fashion. Most of the essential tasks of PMs including molecular transport, cell-cell interaction and signal transduction are carried out by their proteinaceous co...
ORGANISM(S): Cicer arietinum (Chickpea) (Garbanzo) 
2024-12-05 | PXD003697 | Pride
Shotgun proteomics Plant proteomics High resolution mass spectrometry 
ProteomicsPlasma membrane proteomics in the maize primary root elongation zone under water stress conditions
Maintenance of root growth is critical to plant adaptation to drought conditions. Previous work on the maize (Zea mays L.) primary root under water stress showed that cell elongation is maintained in the apical region of the growth zone but progressively inhibited further from the apex. These respon...
ORGANISM(S): Zea mays (Maize) 
2020-11-11 | PXD002027 | Pride
Plasma membrane proteins Maize Gelc-ms/ms Spectral counting 
UnknownCharacterization of plasma membrane proteins in stylosanthes leaves and roots using simplified enrichment method with a nonionic detergent.
Not available
S-EPMC9798454 | biostudies-literature
ProteomicsIn vivo proteome of Pseudomonas aeruginosa in airways of cystic fibrosis patients
Chronic airway infection with P. aeruginosa (PA) is a hallmark of cystic fibrosis (CF) disease. The mechanisms producing PA persistence in CF therapies remain poorly understood. To gain insight on PA physiology in patient airways and better understand how in vivo bacterial functioning differs from...
ORGANISM(S): Homo sapiens (Human) Pseudomonas aeruginosa 
2019-05-09 | PXD011792 | Pride
Cystic fibrosis Bacterial population proteomes Pseudomonas aeruginosa Quantitative proteomics 
ProteomicsPlasma membrane proteomics
Aluminum (Al) toxicity in acid soil is a worldwide agricultural problem that inhibits crop growth and productivity. However, the signal pathways associated with Al tolerance in plants still remain largely unclear. In this study, tandem mass tag (TMT)-based quantitative proteomic methods was used to ...
ORGANISM(S): Glycine max 
2020-06-25 | PXD017160 | Pride
Aluminum resistance Plasma membrane Tmt Prm Tbs Proteomics 
ProteomicsTranscriptomic and phosphoproteomic profiling and metabolite analyses reveal the mechanism of NaHCO3-induced organic acid secretion in grapevine roots
Organic acid secretion is a widespread physiological response of plants to alkalinity. However, the features of alkali-induced secretion of organic acid and the underlying mechanism are poorly understood. Herein, it was indicated that oxalate was the main organic acid synthesized and secreted in vin...
ORGANISM(S): Vitis vinifera (Grape) 
2019-11-11 | PXD013746 | Pride
Transcriptome Organic acid secretion Phosphoproteome Grapevine Alkali stress 
TranscriptomicsChAP-chip by array of Bacillus subtilis to obtain genome-wide profiles of AbrB and Abh
Genome-wide binding profiles of AbrB and Abh was determined by use of ChAP (chromatin affinity purification)-chip method, modified method of ChIP-chip. Genetic modification was undertaken to abrB and abh genes to translationally fuse 2HC (coding sequence of twelve histidine and chitin binding domai...
ORGANISM(S): Bacillus subtilis 
2010-12-24 | E-MEXP-2774 | biostudies-arrayexpress
TranscriptomicsNsrR and ResD binding in Bacillus subtilis
The direct roles of the NO-sensitive NsrR repressor and the ResD response regulator in transcriptional control in Bacillus subtilis
ORGANISM(S): Bacillus subtilis 
2013-11-22 | E-MEXP-3882 | biostudies-arrayexpress
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