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ProteomicsAncient proteins resolve the evolutionary history of Darwin's South American ungulates
The project aimed to characterize the collagen type I (COL1) sequences from Pleistocene Macrauchenia sp. and Toxodon sp. bone samples, and by comparison with existing COL1 sequences available from genomic sources establish the phylogenetic position of both extinct species. In order to resolve their ...
ORGANISM(S): unidentified Equus Orycteropus afer (Aardvark) Cyclopes didactylus (Silky anteater) (Myrmecophaga didactyla) Hippopotamus amphibius (Hippopotamus) Tapirus terrestris (Lowland tapir) (Brazilian tapir) Mylodon darwinii (Giant ground sloth) 
2015-03-19 | PXD001411 | Pride
Lc-ms/ms Macrauchenia Toxodon Bruker maxis hd De novo collagen sequencing Pleistocene Thermo scientific hybrid quadrupole-orbitrap 
OtherCyanobacteria extracts and fractions - LC-MSMS
Cyanobacteria extracts and SPE fractions. LC MSMS analysis was performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 mm C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact HD Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.
ORGANISM(S): Cyanobacteria 
2019-10-10 | MSV000084447 | MassIVE
MetabolomicsPlant species richness elicits changes in the metabolome of grassland species via soil biotic legacy
Species-rich plant communities can induce unique soil biotic legacy effects through changing the abundance and composition of soil biota. These soil legacy effects can cause feedbacks to influence plant performance. In addition, soil biota can induce (defensive) secondary metabolites in shoots ...
2019-05-30 | MTBLS544 | MetaboLights
MetabolomicsCascading effects of root microbial symbiosis on the development and metabolome of the insect herbivore Manduca sexta L

Root mutualistic microbes can modulate the production of plant secondary metabolites affecting plant–herbivore interactions. Still, the main mechanisms underlying the impact of root mutualists on herbivore performance remain ambiguous. In particular, little is known about how changes in the plant...

2023-09-12 | MTBLS2700 | MetaboLights
ProteomicsStM16 standards mixture spiked into Pseudomonas aeruginosa extract
Preparation of PA14 extract spiked with StM16-Mix at different concentrations. A mixture of 16 compounds - 2-methoxybenzoic acid, biochanin A, trans-ferulic acid, 3-indoleacetonitrile, indole-3-carboxaldehyde, kinetin, p-coumaric acid, L-(+)-alpha-phenylglycine, phloridzin dihydrate, rutin trihydrat...
ORGANISM(S): Pseudomonas Aeruginosa Ucbpp-pa14 (ncbitaxon:208963) 
2025-02-26 | MSV000097219 | MassIVE
ProteomicsHuman IgG1 (B-cell receptor) Fc peptide glycan analysis, LC-MS
Since few data are available on glycans expressed by human BCRs, we aimed to analyze the Fc glycans of membrane-bound IgG after BCR capture and tryptic digestion by LC-MS. For this purpose, human B-cell lines from Burkitt Lymphoma (Ramos) expressing IgG1-BCRs in the presence or absence of Fc glycans...
ORGANISM(S): Homo sapiens (Human) 
2023-12-11 | PXD047089 | Pride
Human B-cell receptor Igg1 fc peptide glycans Lc-ms 
MetabolomicsGNPS_Cyanobacteria extracts and fractions - LC-MSMS
Cyanobacteria extracts and SPE fractions. LC MSMS analysis was performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 mm C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact HD Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.
ORGANISM(S): Rivulariaceae (ncbitaxon:1185) 
2019-10-14 | MSV000084453 | GNPS
MetabolomicsGNPS - Cyanobacteria extracts and fractions - LC-MSMS
Cyanobacteria extracts and SPE fractions. LC MSMS analysis was performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 mm C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact HD Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source.
ORGANISM(S): Cyanobacteria (ncbitaxon:1117) 
2019-10-10 | MSV000084447 | GNPS
ProteomicsSi11 - standards mixture to test annotation of ISF features
A mixture of 11 compounds (2-methoxybenzoic acid, biochanin A, trans-ferulic acid, 3-indoleacetonitrile, indole-3-carboxaldehyd, kaempferol, kinetin, p-coumaric acid, L-(+)-alpha-phenylglycine, phloridzin dihydrate, rutin trihydrate) each at a concentration of 20 µM was prepared in a 1:1 mixture of ...
ORGANISM(S): Pure Standards Mixture 
2024-08-06 | MSV000095525 | MassIVE
ProteomicsToxoplasma gondii LC-MS/MS - Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection
The phylum Apicomplexa comprises an ancient group of early divergent eukaryotes, including some of the most deadly pathogens of medical and veterinary importance. Plasmodium species are responsible for malaria, which causes as many as 700,000 deaths per year, while Toxoplasma gondii chronically infe...
ORGANISM(S): Toxoplasma gondii RH 
2016-04-12 | PXD003603 | Pride
Toxoplasma gondii lc-ms/ms 
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