C. jejuni - OmicsDI

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Unknown (1474)
Genomics (452)
Transcriptomics (185)
Proteomics (54)
Metabolomics (8)
Other (1)

Organisms

Campylobacter jejuni (132)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (56)
Andropogon gerardi (34)
Bacteria (34)
Canis lupus familiaris (34)
Cnidaria (34)
Cricetulus griseus (34)
Eukaryota (34)
Fasciola (34)
Hepatitis B virus (34)
Gallus gallus (9)
Campylobacter jejuni subsp. jejuni 81-176 (9)
Homo sapiens (7)
Campylobacter coli (5)
Campylobacter jejuni RM1221 (5)
Campylobacter jejuni subsp. jejuni 81116 (4)
Campylobacter coli RM2228 (4)
Campylobacter lari (2)
Campylobacter (2)
Klebsiella pneumoniae (2)
Mus musculus (2)
Acanthamoeba castellanii (2)
Geobacter metallireducens (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Actinobacillus pleuropneumoniae (1)
Campylobacter jejuni subsp. jejuni (1)
Campylobacter jejuni subsp. jejuni F38011 (1)
Bacillus mobilis (1)
Meleagris gallopavo (1)
Escherichia coli K-12 (1)

Organisms

Campylobacter jejuni (97)
Campylobacter jejuni subsp. jejuni (30)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (29)
Homo sapiens (11)
Campylobacter (9)
Gallus gallus (6)
Campylobacter jejuni subsp. jejuni 81-176 (4)
Campylobacter coli (4)
chicken gut metagenome (3)
mouse gut metagenome (3)
Mus musculus (3)
Campylobacter jejuni subsp. jejuni 81116 (2)
Campylobacter lari (2)
human feces metagenome (2)
gut metagenome (2)
Campylobacter jejuni subsp. jejuni str. RM3431 (1)
Campylobacter jejuni subsp. jejuni str. RM3420 (1)
Campylobacter jejuni subsp. jejuni str. RM3435 (1)
Campylobacter jejuni subsp. jejuni str. RM3442 (1)
Campylobacter jejuni subsp. jejuni str. RM3441 (1)
Campylobacter jejuni subsp. doylei str. RM3440 (1)
Campylobacter jejuni subsp. jejuni str. RM3439 (1)
Campylobacter jejuni subsp. jejuni str. RM3438 (1)
Campylobacter jejuni subsp. jejuni str. RM3437 (1)
Campylobacter jejuni subsp. jejuni str. RM3436 (1)
Campylobacter jejuni subsp. jejuni str. RM3434 (1)
Campylobacter jejuni subsp. jejuni str. RM3433 (1)
Campylobacter jejuni subsp. jejuni str. RM4274 (1)
Campylobacter jejuni subsp. jejuni str. RM3432 (1)
Campylobacter jejuni subsp. jejuni str. RM1503 (1)

Repository

ENA (434)
biostudies-arrayexpress (118)
geo (101)
pride (34)
MetaboLights (5)
MassIVE (4)
GNPS (2)
iProX (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (4)
Cecum (1)
Bacterial protein (1)

Disease

Gastroenteritis (3)
Campylobacteriosis (2)
Diarrhea (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (17)
SWATH MS (6)
Bottom-up proteomics (5)
Top-down proteomics (5)
Mass spectrometry (4)
Data-dependent acquisition (4)
Gel-based experiment (2)
Mass spectrometry assay (1)
ESI (1)
Data-independent acquisition (1)

Instrument Platform

Illumina HiSeq 3000 (4)
Variable Atmosphere Incubator (3)
Ultrospec 3000 (2)
NextSeq 500 (2)
ACQUITY UPLC I-Class (2)
Q Exactive (2)
Synapt XS (2)
LTQ Orbitrap Velos (2)
Direct infusion MS - negative (2)
GeneQuant DNA/RNA caluculator (1)
Genetix aQuire (1)
BD GasPak 150 Jar (1)
G2505A DNA microarray scanner [Agilent] (1)
Bioanalyser (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Liquid Chromatography MS - - hilic (1)
SYNAPT HDMS (Waters) (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2013 (30)
2010 (27)
2012 (20)
2011 (16)
2014 (15)
2005 (15)
2015 (13)
2008 (13)
2024 (12)
2007 (12)
2026 (10)
2018 (9)
2025 (9)
2021 (9)
2020 (9)
2022 (8)
2017 (8)
2016 (8)
2009 (6)
2023 (5)
2019 (5)
2004 (4)
2006 (2)

CHEBI ID

CHEBI:141533 (1)
CHEBI:141548 (1)
CHEBI:141545 (1)
CHEBI:141544 (1)
CHEBI:141543 (1)
CHEBI:141541 (1)
CHEBI:141549 (1)
CHEBI:141531 (1)
CHEBI:141526 (1)
CHEBI:141546 (1)
CHEBI:141528 (1)
CHEBI:141535 (1)
CHEBI:141542 (1)
CHEBI:141532 (1)
CHEBI:26533 (1)
CHEBI:141540 (1)
CHEBI:141539 (1)
CHEBI:141534 (1)
CHEBI:141537 (1)
CHEBI:89393 (1)
CHEBI:141529 (1)
CHEBI:29988 (1)
CHEBI:29993 (1)
CHEBI:73092 (1)
CHEBI:17079 (1)
CHEBI:141547 (1)
CHEBI:89656 (1)
CHEBI:49432 (1)
CHEBI:17882 (1)
CHEBI:18425 (1)

Metabolite Name

GPGro(18:1(9E)/0:0)[U] (1)
GPGro(14:0/0:0)[U] (1)
(2S,3S,5R,6R)-3-{[2-({N-[(2R)-2,4-Dihydroxy-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-6-(1-hydroxyethyl)-7-oxo-1-azabicyclo[3.2.0]heptane-2-carboxylic acid (1)
2,6,9-Trihydroxy-11-(1-hydroxy-2-propanyl)-1,5,10-trimethyl-8-oxatetracyclo[7.4.1.1~7,10~.0~2,7~]pentadec-11-ene-13,15-dione (1)
2,2'-[3-(2-Methoxyphenyl)-1,2-propanediyl]bis(1H-benzimidazole) (1)
8,8-Dimethyl-2-oxo-7,8-dihydro-2H,6H-pyrano[3,2-g]chromen-7-yl (2Z)-2-methyl-2-butenoate (1)
7-[(6-Hydroxy-2,5,5,8a-tetramethyl-4-oxo-1,4,4a,5,6,7,8,8a-octahydro-1-naphthalenyl)methoxy]-2H-chromen-2-one (1)
2,4,6-Trihydroxy-5-[1-(3-hydroxy-1,1,5-trimethyldecahydrocyclopropa[e]inden-5-yl)-3-methylbutyl]isophthalaldehyde (1)
TG(20:0/20:0/20:4(5Z,8Z,11Z,14Z)) (1)
PS(DiMe(11,5)/MonoMe(13,5)) (1)
PE(DiMe(11,5)/MonoMe(13,5)) (1)
TG(16:0/20:3(5Z,8Z,11Z)/O-18:0) (1)
Hovenidulcioside B1 (1)
3-Methylcrotonyl-CoA (1)
PS(15:0/24:0) (1)
PE(DiMe(11,3)/DiMe(11,3)) (1)
PC(14:0/22:0) (1)
PG(16:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (1)
PG(16:1(9Z)/20:4(5Z,8Z,11Z,14Z)) (1)
PE(DiMe(9,3)/DiMe(9,3)) (1)
N-Glycoloylganglioside GM2 (1)
Malvidin 3-(6-malonylglucoside) 5-glucoside (1)
Torvoside C (1)
Hexacarboxylporphyrin I (1)
PA(16:1(9Z)/24:1(15Z)) (1)
PC(14:1(9Z)/18:4(6Z,9Z,12Z,15Z)) (1)
2-Feruloyl-1-sinapoylgentiobiose (1)
Aquifoliunine EIII (1)
DG(24:1n9/0:0/18:2n6) (1)
Diguanosine diphosphate (1)

First Public Date

2013 (93)
2014 (73)
2021 (29)
2015 (29)
2017 (26)
2024 (25)
2025 (24)
2020 (24)
2019 (24)
2026 (21)
2023 (20)
2022 (19)
2018 (16)
2016 (10)
2010 (1)

Classification

bacteria (262)
protozoa (1)

Study type

Transcription profiling by array (63)
Comparative genomic hybridization by array (17)
Unknown experiment type (13)
Proteomic profiling by array (10)
RNA-seq of coding RNA (7)
RNA-seq of total RNA (4)
DNA-seq (2)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2020 (150)
2021 (122)
2022 (116)
2023 (109)
2019 (99)
2025 (92)
2024 (87)
2017 (82)
2018 (81)
2014 (72)
2016 (67)
2013 (67)
2015 (63)
2012 (62)
2010 (54)
2011 (51)
2009 (39)
2008 (34)
2007 (34)
2005 (32)
2006 (19)
2003 (12)
2000 (11)
2004 (10)
2002 (8)
1999 (6)
1998 (6)
2026 (4)
2001 (3)

Lab affiliation

Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia (3)
The University of Sydney (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich (TUM), 85354 Freising, Germany (1)
Biosciences, College of Life and Environmental Sciences Geoffrey Pope Building, University of Exeter Exeter, Devon, EX4 4QD United Kingdom (1)
Center of Excellence for Molecular Food Sciences and Department of Biochemistry, University of Belgrade, Studentski trg 16,11000 Belgrade, Serbia Serbian Academy of Sciences and Arts, Knez Mihajlova 35 Belgrade, Serbia (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Core Facility Proteomics Institute of Clinical Chemistry University Medical Center Göttingen (1)
Core Facility Proteomics, Department of Clinical Medicine, University Medical Center Goettingen, Germany (1)
Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Poland (1)
Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygeine & Tropical Medicine (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia (1)
Department of Molecular Biology and Biotechnology The University of Sheffield Sheffield S10 2TN, UK (1)
Department of Pharmacology, School of Medicine, Case Western Reserve University,cleveland,OH,USA (1)
Department of Pre-Clinical Sciences, Institute of Veterinary Medicine, Warsaw University of Live Sciences – SGGW Poland (1)
Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany (1)
Institute for Biomedicine and Glycomics, Griffith University, Gold Coast (1)
Institute of Veterinary Medicine Warsaw University of Life Sciences (1)
London School of Hygiene and Tropical Medicine (1)
London School of Hygiene and Tropical Medicine keppel street London WC!E 7HT United Kingdom (1)
Mass Spectrometry and Proteomics Core Facility, National Microbiology Laboratory, Public Health Agency of Canada 1015 Arlington Street, Winnipeg, Manitoba, Canada R3E 3R2 (1)
National Microbiology Laboratory, Public Health Agency of Canada Mass Spectrometry and Proteomics Core Facility (1)
National Microbiology Laboratory, Public Health Agency of Canada Proteomics and Mass Spectrometry Core Facility (1)
National Microbiology Laboratory, Public Health Agency of Canada Proteomics and Mass Spectroscopy Core Facility (1)
Proteomics facility, Central Science Laboratory, University of Tasmania (1)
School of Life and Environmental Sciences,Charles Perkins Centre, and Sydney Mass Spectrometry, The University of Sydney, Australia (1)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics (1)
University of Georgia, United States (1)
University of Nottingham (1)
University of Sydney (1)
Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy en Josas, France (1)

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Metabolomic profiling of Campylobacter jejuni with resistance gene ermB by ultra-high performance liquid chromatography-quadrupole time-of-flight mass spectrometry and tandem quadrupole mass spectrometry

The metabolome changes of Campylobacter jejuni with resistant gene ermB remain unclear. Here, we described an untargeted metabolomic workflow based on ultra-high performance liquid chromatography-quadrupole time-of-flight mass spectrometry to investigate the metabolites perturbations mediated by erm...

2018-08-07 | MTBLS496 | MetaboLights

Comparing Campylobacter jejuni to three other enteric pathogens in OligoMM 12 mice reveals pathogen-specific host and microbiota responses

Campylobacter jejuni, non-typhoidal Salmonella spp., Listeria monocytogenes and enteropathogenic/enterohemorrhagic Escherichia coli (EPEC/EHEC) are leading causes of food-borne illness worldwide. Citrobacter rodentium has been used to model EPEC and EHEC infection ...

2025-02-25 | MTBLS11078 | MetaboLights

Chicken/C. jejuni Bile Acid Study

Not available

ORGANISM(S): Gallus gallus

ST000300 | MetabolomicsWorkbench

Campylobacter jejuni Cj1000 regulon

Transcriptional regulation mediates adaptation of pathogens to environmental stimuli and is important for host colonisation. The Campylobacter jejuni genome sequence reveals a surprisingly small set of regulators, mostly of unknown function, suggesting an intricate regulatory network. Interestingly,...