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ProteomicsCALCOCO1 acts with VAMP-Associated Proteins to mediate ER-phagy
To explore the interaction partners of CALCOCO1, we immunoprecipitated EGFP-CALCOCO1 from HEK 293 cells’ lysate and identified the bound proteins by mass spectrometry. The identified proteins were then filtered against GFP control.
ORGANISM(S): Homo sapiens (Human) 
2020-06-02 | PXD018894 | Pride
Golgi Vapb Vapa Er-phagy Ffat motif Calcoco1 Autophagy 
UnknownCALCOCO1 acts with VAMP-associated proteins to mediate ER-phagy.
Not available
S-EPMC7396842 | biostudies-literature
UnknownRegulation of Golgi turnover by CALCOCO1-mediated selective autophagy.
Not available
S-EPMC8059076 | biostudies-literature
UnknownMass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy.
Not available
S-EPMC7751563 | biostudies-literature
UnknownCALCOCO1 acts with VAMP-Associated Proteins to mediate ER-phagy.
Not available
S-SCDT-EMBOJ-2019-103649 | biostudies-other
TranscriptomicsTranscriptomic analysis of cocoa (Theobroma cacao L.) response to water deficit
Cocoa is a crop of cultural, nutritional and social importance in Latin America. Cocoa production is mainly supported by smallholders and is central for the food security of these farmer families. Despite being part of their everyday diet and an important source of antioxidants and other healthy bio...
ORGANISM(S): Theobroma cacao 
2023-01-31 | E-MTAB-8525 | biostudies-arrayexpress
TranscriptomicsA HOTAIR regulatory element modulates glioma cell sensitivity to temozolomide through long-range regulation of multiple target genes
Temozolomide (TMZ) is a frequently used chemotherapy for glioma; however, chemoresistance is a major problem limiting its effectiveness. Thus knowledge of mechanisms underlying this outcome could improve patient prognosis. Here, we report that deletion of a regulatory element in the HOTAIR locus inc...
ORGANISM(S): Homo sapiens 
2019-01-25 | GSE125629 | GEO
TranscriptomicsBreast tumors from CHEK2 1100delC mutation carriers: genomic landscape and clinical implications (GEX)
Introduction: CHEK2 is a moderate penetrance breast cancer risk gene, whose truncating mutation 1100delC increases the risk about two fold. We pursued to investigate gene copy number aberrations and gene expression profiles that are typical for breast tumors of CHEK2 1100delC mutation carriers. Mat...
ORGANISM(S): Homo sapiens 
2011-05-10 | E-GEOD-24697 | biostudies-arrayexpress
TranscriptomicsBreast tumors from CHEK2 1100delC mutation carriers: genomic landscape and clinical implications (CGH)
Abstract Introduction: CHEK2 is a moderate penetrance breast cancer risk gene, whose truncating mutation 1100delC increases the risk about two fold. We pursued to investigate gene copy number aberrations and gene expression profiles that are typical for breast tumors of CHEK2 1100delC mutation carri...
ORGANISM(S): Homo sapiens 
2011-05-10 | E-GEOD-24698 | biostudies-arrayexpress
ProteomicsMass spectrometry proteomics reveals proteins that function in mTOR regulated selective autophagy
We used proteomic profiling to identify proteins in the mTOR-autophagy axis. Mouse cell lines lacking individual autophagy genes (Atg5 or Ulk1/Ulk2) were treated with an mTOR inhibitor to induce autophagy and cultured in media with either glucose or galactose. Mass spectrometry proteome profiling re...
ORGANISM(S): Mus musculus (Mouse) 
2020-01-23 | PXD014990 | Pride
Selective autophagy  mtor  mass spectrometry proteomics  calcoco1  lc3  er-phagy  atg5  ulk1  ulk2 
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