Calvo M M - OmicsDI

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Unknown (2085)
Proteomics (84)
Transcriptomics (45)
Genomics (6)
Models (3)
Metabolomics (3)

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Homo sapiens (72)
Mus musculus (37)
Saccharomyces cerevisiae (4)
Rattus norvegicus (4)
Sus scrofa domesticus (3)
Trypanosoma brucei brucei (3)
Anopheles gambiae (2)
Candida albicans (2)
Drosophila melanogaster (2)
Plasmodium vivax (2)
Trypanosoma brucei (2)
Agaricus bisporus var. bisporus H97 (1)
Bos taurus (1)
Arabidopsis thaliana (1)
Chlamydomonas reinhardtii (1)
Mytilus galloprovincialis (1)
Ochlerotatus triseriatus (1)

Repository

pride (82)
biostudies-arrayexpress (45)
EGA (6)
BioModels (3)
MetaboLights (3)
MassIVE (2)

Tissue

Cell culture (12)
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Disease

Lymphoid leukemia (2)
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Normal (1)
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Crohn's disease (1)
Female breast cancer (1)
Inflammation (1)
Malaria (1)
Mitochondrial metabolism disease (1)
Mixed disorder as reaction to stress (1)
Multiple sclerosis (1)
Myopathy (1)
Neurodegeneration (1)
Osteosarcoma (1)
Permanent neonatal diabetes mellitus (1)
Plasmodium vivax malaria (1)
Proteasome-associated autoinflammatory syndrome 1 (1)
Proteasome-associated autoinflammatory syndrome 3 (1)

Technology Type

Mass Spectrometry (82)
Shotgun proteomics (45)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (11)
Data-independent acquisition (4)
Illumina HiSeq 2000 (3)
Mass spectrometry (3)
SWATH MS (3)
Gel-based experiment (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 4000 (3)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Q Exactive (2)
Illumina HiSeq 2000 (1)
Orbitrap Exploris 240 (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2022 (22)
2025 (13)
2021 (11)
2019 (10)
2023 (10)
2026 (10)
2024 (9)
2014 (8)
2018 (6)
2012 (6)
2017 (5)
2015 (5)
2013 (4)
2016 (3)
2010 (3)
2020 (3)
2011 (2)
2008 (2)
2009 (1)
2007 (1)
2005 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15846 (2)
CHEBI:15891 (2)
CHEBI:16113 (2)
CHEBI:16449 (2)
CHEBI:16737 (2)
CHEBI:16831 (2)
CHEBI:17084 (2)
CHEBI:17126 (2)
CHEBI:17151 (2)
CHEBI:17750 (2)
CHEBI:17797 (2)
CHEBI:18012 (2)
CHEBI:18132 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:18300 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:26271 (2)
CHEBI:27480 (2)
CHEBI:28044 (2)
CHEBI:28300 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:6650 (2)
CHEBI:741548 (2)
CHEBI:78320 (2)
CHEBI:91315 (2)

Metabolite Name

(3'-5')-cytidylyluridine (1)
(3'-5')-guanylyluridine (1)
1,2,4-Benzenetricarboxylic acid (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-(Carboxymethyl)cyclohexanecarboxylic acid (1)
1-arachidonoyl-GPI (20:4) (1)
1-docosene (1)
1-linoleoyl-GPC (18:2) (1)
1-methyladenine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6) (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)
1-palmitoyl-GPC (16:0) (1)
1-palmitoyl-GPE (16:0) (1)

IsPrivate

False (3)

Submitter Keywords

Immuno-oncology (2)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (6)
Genotyping by array (2)
Other (2)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (295)
2025 (270)
2023 (254)
2021 (251)
2024 (191)
2020 (163)
2019 (116)
2017 (94)
2018 (91)
2016 (84)
2014 (64)
2015 (63)
2012 (40)
2013 (33)
2026 (33)
2011 (25)
2010 (21)
2009 (12)
2008 (9)
2007 (8)
2006 (4)
2005 (2)
2003 (2)
2002 (1)
2001 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

CNIC (6)
Biocenter, Faculty of Biology, Genetics Ludwig-Maximilians-University Munich (LMU) 82152 Martinsried, Germany (2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (2)
Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany (2)
1- Departamento de Biología Molecular, Centro de Biología Molecular "Severo Ochoa" (CBMSO), c/Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2- Instituto Universitario de Biología Molecular, IUBM, Universidad Autónoma de Madrid, Madrid, Spain. 3- Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 4- Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Biocenter, Faculty of Biology, Genetics Ludwig-Maximilians-University Munich (LMU) 82152 Martinsried, Germany (1)
Biocenter, Faculty of Biology, Genetics, Ludwig-Maximilians-University Munich (LMU), 82152 Martinsried, Germany (1)
Biologia Cel·lular Departament de Biomedicina Facultat de Medicina i Ciències de la Salut Universitat de Barcelona Spain (1)
Breast Cancer Clinical Research Unit Centro Nacional de Investigaciones Oncológicas – CNIO Madrid, Spain. (1)
CNIC, Spain (1)
CNIO (1)
CRG, UPF (1)
CRG/UPF, Barcelona, Spain (1)
Cardiovascular proteomics group, Spanish National Center for Cardiovascular Research (CNIC), Madrid, 28028, Spain (1)
Center for Genomic Regulation (CRG) (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology; Gene Regulation, Stem Cells and Cancer; Sdelci Lab; Barcelona, Spain (1)
Centro Nacional de Investigaciones Cardiovasculares, 28029, Madrid, Spain (1)
Centro de Biologia Molecular Severo Ochoa Spanish Research Council Nicolas Cabrera,1 28049 Madrid (Spain) (1)
Centro de Biología Molecular Severo Ochoa Spanish Research Council Nicolas Cabrera, 1 28049 Madrid (Spain) (1)
Chief, Molecular Parasitology and Entomology Unit Laboratory of Malaria and Vector Research National Institutes of Health (1)
Department of Biochemistry and Molecular Biology, University of Salamanca (Salamanca, Spain). Instituto de Investigación Biomédica de Salamanca (IBSAL) (Salamanca, Spain). (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17177 Stockholm, Sweden Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Solna/Sweden (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17165, Sweden. (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Department of Pathology and Medicine, University of California at San Diego, La Jolla, CA 92093, USA (1)
Department: Radiation Oncology; Weill Cornell Medicine: Englander Institute of Precision Medicine; USA. (1)

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cpsA regulates mycotoxin production, morphogenesis and cell wall biosynthesis in the fungus Aspergillus nidulans.

Not available

S-EPMC5506848 | biostudies-literature

Proteomics from centrosome-enriched fractions of Jurkat E6-1 human T cells, human embryonic kidney 293 cells, resting human T lymphoblasts and activated human T lymphoblasts

Centrosome-enriched fractions of Jurkat E6-1 human T cells (JK), human embryonic kidney (HEK) 293 cells, resting human T lymphoblasts (LT CTRL) and activated human T lymphoblasts (LT ACT), with one biological replicate for each condition, were analysed by label-free LC-MS/MS. For further details, re...

ORGANISM(S): Homo sapiens (Human)

2025-12-18 | PXD063199 | Pride

The genome of M. acetivorans reveals extensive metabolic and physiological diversity.

Not available

S-EPMC187521 | biostudies-literature

Stromal oncostatin M cytokine promotes breast cancer progression by reprogramming the tumor microenvironment.

Not available

S-EPMC8970678 | biostudies-literature

Genomic Analysis of Two MDR Isolates of Salmonella enterica Serovar Infantis from a Spanish Hospital Bearing the bla_CTX-M-65 Gene with or without fosA3 in pESI-like Plasmids.

Not available

S-EPMC9219668 | biostudies-literature

Cell cannibalism, a cell-death process driven by the Transforming Growth Factor-M-NM-2 and the Nuclear Protein 1, opposes to metastasis in pancreatic cancer

Pancreatic adenocarcinoma (PDAC) is an extremely deadly disease for which all treatments available have failed to improve life expectancy significantly. This may be explained by the high metastatic potential of PDAC cells, which results from their physiological dedifferentiation towards a mesenchyma...

ORGANISM(S): Homo sapiens

2012-06-17 | E-GEOD-38772 | biostudies-arrayexpress

Vitreous proteome of transgenic INSC94Y pigs compared to wild type

INSC94Y transgenic pigs serve as a valuable model for permanent neonatal diabetes mellitus. Through genetically engineered modifications in the insulin (INS) gene, this model presents with impaired insulin secretion, resulting elevated fasting blood-glucose levels (hyperglycemia) [1].One of the seve...

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2024-08-27 | PXD038198 | Pride

Quantitative label-free lc-ms/ms diabetes mellitus permanent neonatal diabetes diabetic retinopathy genetically modified pig insc94y porcine model vitreous

Proteomics from centrosome-enriched fractions from resting and activated T lymphoblasts

Human resting and activated T lymphoblast (LT CTRL and LT ACT) centrosome-enriched subcellular fractions from LT CTRL and LT ACT were prepared as analysed by multiplexed quantitative proteomics and LC-MS/MS. Samples from different donors were pooled after first lysis. For further details, refer to r...

ORGANISM(S): Homo sapiens (Human)

2025-12-18 | PXD063195 | Pride

T lymphoblasts Post-translational modifications Human Itraq Lc-ms/ms

Association of Copresence of Pathogenic Variants Related to Amyotrophic Lateral Sclerosis and Prognosis.

Not available

S-EPMC10351316 | biostudies-literature

Novel Mutation m.10372A>G in MT-ND3 Causing Sensorimotor Axonal Polyneuropathy.

Not available

S-EPMC7962437 | biostudies-literature

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