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TranscriptomicsTranscription profiling of Col and CHY-10 mutant in Arabidopsis under cold stress
Effect of cold treatment in Arabidopsis thaliana Ecotype Columbia versus CHY1 mutant
ORGANISM(S): Arabidopsis thaliana 
2004-05-07 | E-MEXP-67 | biostudies-arrayexpress
ProteomicsIdentification of long noncoding RNA DANCR binding proteins
To capture endogenous DANCR transcripts, we designed and synthesized 11 5′ biotinylated 90-mer DNA oligonucleotides antisense that spanned the entire length of the target RNA DANCR. Pull-down proteins were separated by SDS-PAGE gel and stained with Fast Silver Stain Kit (Beyotime, China). Cell lysat...
ORGANISM(S): Homo Sapiens 
2022-11-15 | PXD038169 |
UnknownCharacterization of genotype-phenotype correlation with MORC2 mutated Axonal Charcot-Marie-Tooth disease in a cohort of Chinese patients.
Not available
S-EPMC8166055 | biostudies-literature
TranscriptomicsATAC-seq of iPSC-derived NPCs and neurons
To connect the neuronal developmental disorders associated GWAS signal to their target effector genes, we performed an integrated analysis of transcriptomics, epigenomics and chromatin conformation changes in an in vitro cellular model. Induced human pluripotent stem cell–derived neural progenitor c...
ORGANISM(S): Homo sapiens 
2021-05-27 | E-MTAB-9087 | biostudies-arrayexpress
UnknownLife-threatening event in laparoscopic hepatic surgery: Training curriculum on sudden hepatic artery haemorrhage.
Not available
S-EPMC11457428 | biostudies-literature
TranscriptomicsATAC-seq analysis of LPS-trained bone marrow derived macrophages (BMDMs) from WT and SLC1A5_var transgenic mice.
The aim of this study is to evaluate the changes in the chromatin accessibility landscape of BMDMs from WT and SLC1A5_var transgenic mice after low-dose LPS training. We compared the data of ATAC-seq performed on nuclei extracted from naive and trained BMDM from both genotypes. Inter-group compariso...
ORGANISM(S): Mus musculus 
2026-06-24 | E-MTAB-16191 | biostudies-arrayexpress
UnknownThe 100 most-cited articles in thyroid surgery from 1990 to 2023: a bibliometric analysis.
Not available
S-EPMC12004318 | biostudies-literature
TranscriptomicsGenome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells
Genome-wide analysis of histone modification (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3), protein-DNA binding (TAF1, P300, Pou5f1 and Nanog), cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells We generated histone modification da...
ORGANISM(S): Homo sapiens 
2012-02-28 | E-GEOD-36114 | biostudies-arrayexpress
TranscriptomicsA 3D molecular atlas of the chick embryonic heart
We performed a detailed analysis of gene expression in the 2-day (HH12) embryonic chick heart. RNA-seq of 13 microdissected heart regions reveals regionalised expression of about 15,000 genes (Dataset 1). Of these, 131 genes that are differentially expressed (FPKM ≥20, fold change ≥1.1-4.0) within a...
ORGANISM(S): Gallus gallus 
2019-10-02 | E-MTAB-7663 | biostudies-arrayexpress
TranscriptomicsSPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data
Active protein translation can be assessed and measured using ribosome profiling sequencing strategies. Existing approaches make use of sequence fragment length or frame occupancy to differentiate between active translation and background noise, however they do not consider additional characteristic...
ORGANISM(S): Homo sapiens 
2016-07-01 | E-GEOD-75947 | biostudies-arrayexpress
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