Cao Xue X - OmicsDI

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Unknown (742)
Proteomics (23)
Transcriptomics (19)
Genomics (5)
Metabolomics (4)

Organisms

Homo sapiens (19)
Acidithiobacillus ferrooxidans ATCC 53993 (9)
Aerococcus urinae NBRC 15544 = CCUG 36881 (9)
Allexis (9)
Arabidopsis thaliana (9)
Cyanophora paradoxa (9)
Ensifer adhaerens (9)
Enterococcus faecalis (9)
Globicatella sanguinis (9)
Histomonas meleagridis (9)
Human immunodeficiency virus 1 (9)
Leishmania major strain Friedlin (9)
Listeria monocytogenes (9)
Lotus japonicus (9)
Marchantia polymorpha (9)
Medicago truncatula (9)
Methylohalobius crimeensis 10Ki (9)
Mus musculus (9)
Mus musculus (6)
Anser cygnoides (2)
Scutellaria baicalensis (2)
uncultured bacterium (1)
Solanum habrochaites (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Canis lupus familiaris (1)
Arabidopsis thaliana (1)
Cardamine circaeoides (1)
Isatis tinctoria (1)
Macaca fascicularis fascicularis (1)

Repository

biostudies-arrayexpress (22)
iProX (14)
pride (9)
MetaboLights (4)
EGA (2)

Tissue

Cell culture (4)
Cell suspension culture (1)
Early embryonic cell (1)
Epithelial cell (1)
Flower bud (1)
Fruit (1)
Leaf (1)
Nephrocyte (1)
Plant cell (1)
Prostate neuroendocrine cell (1)
Sertoli cell (1)
Testis (1)

Disease

Diarrhea (1)
Oligospermia (1)
Prostate neuroendocrine neoplasm (1)

Technology Type

Mass Spectrometry (9)
Mass spectrometry (4)
Shotgun proteomics (3)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2000 (1)
GCMS-QP2010 Plus (Shimadzu) (1)
7000C Triple Quadrupole GC/MS (Agilent) (1)
SYNAPT HDMS (Waters) (1)

Publication Date

2014 (7)
2015 (5)
2013 (5)
2023 (5)
2025 (3)
2021 (3)
2020 (2)
2016 (2)
2010 (2)
2019 (2)
2018 (2)
2024 (1)
2026 (1)
2022 (1)

CHEBI ID

CHEBI:17596 (2)
CHEBI:15756 (2)
CHEBI:17368 (2)
CHEBI:194570 (1)
CHEBI:191920 (1)
CHEBI:194568 (1)
CHEBI:194564 (1)
CHEBI:194560 (1)
CHEBI:194571 (1)
CHEBI:194569 (1)
CHEBI:194567 (1)
CHEBI:194563 (1)
CHEBI:194561 (1)
CHEBI:189014 (1)
CHEBI:176044 (1)
CHEBI:183546 (1)
CHEBI:194565 (1)
CHEBI:176770 (1)
CHEBI:194562 (1)
CHEBI:186951 (1)
CHEBI:183527 (1)
CHEBI:78745 (1)
CHEBI:66237 (1)
CHEBI:34128 (1)
CHEBI:36529 (1)
CHEBI:85162 (1)
CHEBI:80475 (1)
CHEBI:3293|CHEBI:614 (1)
CHEBI:16112|CHEBI:16065 (1)
CHEBI:85151 (1)

Metabolite Name

Bicyclo-PGE2 (1)
TMC-1D (1)
Aristolochene (1)
9'-Hydroxyabscisate (1)
3-Hydroxylubimin (1)
15-Hydroxysolavetivone (1)
Feruloylserotonin (1)
Dihydroconiferyl alcohol glucoside (1)
Caffeic acid 3-glucoside|1-caffeoyl-beta-D-glucose (1)
1,3-Dicaffeoylquinate (1)
Caffeoylquinate|scopolin (1)
Dehydroshikimate (1)
Quercetin 3-(6''-p-hydroxybenzoylgalactoside) (1)
(2S)-5,7,3',4'-Tetrahydroxyflavanone 7-(6-galloylglucoside) (1)
Cyanidin 3-(2''-galloylgalactoside) (1)
Formononetin 7-O-rutinoside (1)
Luteolin 7-glucoside-4'-(Z-2-methyl-2-butenoate (1)
(2S)-7,4'-Dihydroxy-8-geranylflavanone (1)
5,6,7,8-Tetra methoxy-3',4'-methylenedioxy isoflavone (1)
Quercetin tetramethyl (5,7,3',4') ether (1)
Euchrenone (1)
Wighteone (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-ß-D-glucoside (1)
O-Sinapoylglucarolactone (1)
PKODiA-PC (1)
2'-O-Methylphaseollinisoflavan (1)
Pelargonidin 3-O-beta-D-p-coumaroylglucoside (1)
PC(16:0/5:0(COOH)) (1)
PS(DiMe(11,3)/DiMe(11,5)) (1)
DG(14:0/19:0/0:0) (1)

Study type

RNA-seq of coding RNA (6)
Transcription profiling by array (5)
ChIP-seq (3)
Comparative genomic hybridization by array (2)
Other (2)
RNA-seq of non coding RNA (2)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2025 (138)
2022 (121)
2023 (93)
2024 (88)
2021 (76)
2020 (63)
2019 (31)
2018 (26)
2017 (23)
2014 (22)
2015 (19)
2016 (17)
2013 (16)
2026 (16)
2012 (5)
2011 (5)
2010 (4)
2008 (1)

Lab affiliation

Center of Reproductive Medicine, Nanjing Jinling Hospital, Clinical School of Medical College, Nanjing University, China. (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/ Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou 225009, China (1)
Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, USA (1)
School of Life Science, Sun Yat-sen University, Guangzhou, 510006, China (1)
School of Life Sience, Sun Yat-sen University (1)
State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, the First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310003, China (1)
UCLA (1)
Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences (1)

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The activity and stability of CeO₂@CaO catalysts for the production of biodiesel.

Not available

S-EPMC9086313 | biostudies-literature

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

To identify tomato miRNAs involved in chilling response, two small RNA libraries and two degradome libraries from chilling-treated(4M-BM-0C/4M-BM-0C for 1hM-oM-

ORGANISM(S): Solanum habrochaites

2015-03-03 | E-GEOD-57335 | biostudies-arrayexpress

Comparative Study of Three Mixing Methods in Fusion Technique for Determining Major and Minor Elements Using Wavelength Dispersive X-ray Fluorescence Spectroscopy.

Not available

S-EPMC7570679 | biostudies-literature

Dose-dependent dual roles of PDGF-BB–PDGFR-? in vascular remodeling and opposing effects of anti-PDGF drug-induced metastasis

Anti-PDGF agents are routinely used as a key component in front-line therapy for the treatment of various cancers. However, molecular mechanisms underlying their impact on vascular remodeling in relation to the dose issue remain poorly understood. Here we show that in high PDGF-BB-producing tumors, ...

ORGANISM(S): Mus musculus

2013-07-22 | E-GEOD-46564 | biostudies-arrayexpress

Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein? regulates plant flowering by targeted alternative polyadenylation

Alternative polyadenylation (APA) is a widespread mechanism for gene regulation and has been implicated in flowering, but the molecular basis governing the choice of a specific poly(A) site during the vegetative-to-reproductive growth transition remains unclear. Here we characterize HLP1, an hnRNP A...

ORGANISM(S): Arabidopsis thaliana

2015-06-30 | E-GEOD-39051 | biostudies-arrayexpress

Building microbial consortia to enhance straw degradation, phosphorus solubilization, and soil fertility for rice growth.

Not available

S-EPMC11337586 | biostudies-literature

OsJMJ703, a Histone H3K4 Demethylase, Controls Transposon Activity in Rice

Retrotransposons are classified into long terminal repeat (LTR) or non-LTR retrotransoposons, and both types can mobilize in a “copy and paste” manner. Rice genome contains >40% of repetitive sequences or transposable elements (TEs) that scattered throughout the genome. TE activities are tightly reg...

ORGANISM(S): Oryza sativa Japonica Group

2013-01-01 | E-GEOD-41183 | biostudies-arrayexpress