Carbodiimide - OmicsDI

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Mass Spectrometry (32)
Chemical cross-linking coupled with mass spectrometry proteomics (18)
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A LECO Pegasus 4D instrument with an Agilent 7683B autosampler, Agilent 7890A gas chromatograph and time-of-flight mass spectrometer (1)
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2017 (2)

CHEBI ID

CHEBI:33118 (6)
CHEBI:18012 (6)
CHEBI:45296 (5)
CHEBI:27632 (5)
CHEBI:84273 (5)
CHEBI:84249 (5)
CHEBI:55381 (5)
CHEBI:17191 (5)
CHEBI:16988 (5)
CHEBI:28842 (5)
CHEBI:17895 (5)
CHEBI:15603 (5)
CHEBI:33508 (5)
CHEBI:17053 (5)
CHEBI:26078 (5)
CHEBI:16414 (5)
CHEBI:28837 (5)
CHEBI:17203 (5)
CHEBI:16015 (5)
CHEBI:16865 (5)
CHEBI:30769 (5)
CHEBI:15756 (5)
CHEBI:15428 (5)
CHEBI:16958 (5)
CHEBI:17754 (5)
CHEBI:16695 (5)
CHEBI:17781 (4)
CHEBI:28718 (4)
CHEBI:84235 (4)
CHEBI:84230 (4)

Metabolite Name

Carbodiimide (7)
Fumaric acid (7)
Gamma-Aminobutyric acid (6)
L-Glutamate 2 (6)
Boric acid (6)
Hexadecane (6)
Diacetone alcohol (6)
Beta-Alanine (6)
L-Tyrosine (6)
Caprylic acid (6)
L-Glutamate (6)
D-Ribose (6)
L-Proline (6)
Glycerol (6)
L-Aspartic acid (6)
L-Leucine (6)
L-Isoleucine (6)
L-Tyrosine 2 (5)
2,6,10,15-tetramethylheptadecane (5)
Pentasiloxane, dodecamethyl- (5)
Trans-(2,3-Diphenylcyclopropyl)methyl phenyl sulfoxide (5)
1-Iodo-2-methylundecane (5)
4,6-Dimethyldodecane (5)
Ethanolamine (5)
L-Allothreonine (5)
Phosphoric acid (5)
Mannitol (5)
Adenosine monophosphate (5)
L-Malic acid (5)
Putrescine (5)

First Public Date

2024 (3)
2019 (2)
2026 (1)
2022 (1)
2018 (1)
2014 (1)

Classification

bacteria (3)

Study type

Proteomic profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2022 (44)
2021 (42)
2023 (39)
2025 (37)
2019 (35)
2020 (34)
2018 (25)
2017 (23)
2024 (22)
2014 (17)
2016 (15)
2015 (11)
2013 (8)
2012 (5)
2011 (5)
2009 (5)
2008 (5)
2026 (4)
2010 (2)
2007 (1)
2006 (1)
2005 (1)
2004 (1)
2002 (1)
2000 (1)
1993 (1)

Lab affiliation

Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
Eppley Institute University of Nebraska Medical Center USA (1)
Department of Nephrology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China;Guangdong-Hong Kong Joint Laboratory on Immunological and Genetic Kidney Diseases; Guangzhou, China. (1)
Laboratory of Molecular Biology (1)
1Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh 2Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, 13355, Germany (1)
School of Biosciences, Parkville, VIC 3010, Melbourne, Australia (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
Department of Molecular Mechanisms of Disease, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland (1)
University of Edinburgh, Wellcome Centre for Cell Biology, Edinburgh, UK. Technische Universität Berlin, Chair of Bioanalytics, Berlin, Germany. (1)
Weill Cornell Medicine (1)
Department of Structural and Computational Biology, Max Perutz Labs, University of Vienna, Austria (1)
TEDA Institute of Biological Sciences and Biotechnology, Nankai University, China (1)
Department of Medicine (GI Oncology), UCSF, United States (1)
University of Muenster, Institute of Plant Biology and Biotechnology (1)
Proteomics Pltaform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio Spain (1)
Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, UK Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, German (1)
Max-Planck Institute of Biophysics (1)
Max-Planck Institute for Biophysics (1)
Centre for Mechanochemical Cell Biology, University of Warwick, Coventry, CV4 7AL, UK (1)
Room 4.17, Michael Swann Building, Max Born Crescent, Edinburgh EH9 3BF (1)
Structural Biology of Nuclear Receptors, Department of Biochemistry and Molecular Biomedicine, Faculty of Biology, University of Barcelona (UB), 08028 Barcelona, Spain (1)
Medicine, University of California San Francisco (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic ORCID logohttp://orcid.org/0000-0001-6976-8446 (1)
University of Washington (1)
Department of Biochemistry, University of California, Riverside Riverside, CA, USA (1)
Division of Biochemistry, Department of Biology, University of Fribourg, Fribourg, Switzerland (1)
University of Oxford (1)
University of Edinburgh (1)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (1)

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Carbodiimide reagents for the chemical probing of RNA structure in cells

PRJNA485142 | ENA

Carbodiimide reagents for the chemical probing of RNA structure in cells

Deciphering the conformations of RNAs in their cellular environment allows identification of RNA elements with potentially functional roles within biological contexts. Insight into the conformation of RNA in cells has been achieved using chemical probes that were developed to react specifically with...

ORGANISM(S): Homo sapiens Mus musculus

2018-12-26 | GSE118309 | GEO

Carbodiimide Ring-Opening Metathesis Polymerization.

Not available

S-EPMC10311665 | biostudies-literature

UV-Induced Photodegradation of 2-Aminothiazole-4-Carboxylic Acid: Identification of New Carbodiimide Molecules.

Not available

S-EPMC12472919 | biostudies-literature

Suppressing catalyst poisoning in the carbodiimide-fueled reaction cycle.

Not available

S-EPMC10646924 | biostudies-literature

Carbodiimide reagents for the chemical probing of RNA structure in cells.