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TranscriptomicsModulation of gene expression by ZNF143, THAP11 and NOTCH1 via overlapping binding sites in mammalian cells
In this study we investigated the genome wide DNA binding profile of ZNF143 and ICN1 in human and murine cells. We also analyzed the expression profile in human cells after overexpression or knockdown of ZNF143. To identify ZNF143 targets we performed ChIP-seq on 4 human cells lines and 3 murine cel...
ORGANISM(S): Mus musculus 
2013-02-13 | E-GEOD-39263 | biostudies-arrayexpress
TranscriptomicsQuantitative transcriptomic analysis of wild type and metabolic mutants of Clostrdidium acetobutylicum ATCC824 under different physiological conditions
Transcriptomic analysis was applied to acidogenic, solventogenic and alcohologenic steady-state C. acetobutylicum cells for understanding the regulation of the metabolism of this organism. Used microarray is Clostridium acetobutylicum ATCC824 transcriptional 44k v4, correspondance to GPL10908 Phosph...
ORGANISM(S): Clostridium acetobutylicum ATCC 824 
2015-07-01 | E-GEOD-69973 | biostudies-arrayexpress
TranscriptomicsAnaerobic carbon-limited retentostat cultivation of Lactobacillus plantarum WCFS1
Lactobacillus plantarum WCFS1 was grown under anaerobic carbon-limited conditions in a chemostat with complete biomass retention (retentostat). In this cultivation system, the biomass concentration progressively increases while the dilution rate is kept constant, resulting in decreased specific susb...
ORGANISM(S): Lactobacillus plantarum 
2010-05-16 | E-GEOD-18340 | biostudies-arrayexpress
TranscriptomicsMh SP17 biofilms on Hydrophobic Organic Compounds (HOCs)
Marinobacter hydrocarbonoclasticus SP17 strain forms biofilms on water-insoluble hydrophobic organic compounds which it can use as the sole source for carbon and energy. Gene expression profiles were determined in biofilm cells grown on hexadecane (an alkane), triolein (a triglyceride) and planktoni...
ORGANISM(S): Marinobacter hydrocarbonoclasticus ATCC 49840 
2014-12-09 | E-MTAB-2593 | biostudies-arrayexpress
TranscriptomicsGene profiling during symbiosis between the actinorhizal tree Alnus glutinosa and the actinobacteria Frankia alni ACN14
Alnus glutinosa belongs to a family of angiosperms called actinorhizal plants because they can develop nitrogen-fixing nodules in association with the soil bacteria Frankia. The aim of this transcriptomic study was to get a global view of the plant symbiotic genetic program and to identify new key p...
ORGANISM(S): Alnus glutinosa 
2011-04-11 | E-GEOD-24153 | biostudies-arrayexpress
MetabolomicsBioinspired Rhamnolipid Protects Wheat Against Zymoseptoria tritici Through Mainly Direct Antifungal Activity and Without Major Impact on Leaf Physiology

Rhamnolipids (RLs), glycolipids biosynthesized by the Pseudomonas and Burkholderia genera, are known to display various activities against a wide range of pathogens. Most previous studies on RLs focused on their direct antimicrobial activity, while only a few reports described t...

2022-06-21 | MTBLS4542 | MetaboLights
ModelsGoffin2010_L_plantarum_Metabolism
This is the genome scale metabolic reconstruction of Lactobacillus plantarum described in the article: Understanding the physiology of Lactobacillus plantarum at zero growth. Goffin P, van de Bunt B, Giovane M, Leveau JH, Höppener-Ogawa S, Teusink B, Hugenholtz J. ...
2005-01-01 | MODEL1011090000 | BioModels
UnknownSolvent-Free Hydrogenation of Squalene Using Parts per Million Levels of Palladium Supported on Carbon Nanotubes: Shift from Batch Reactor to Continuous-Flow System.
Not available
S-EPMC9804222 | biostudies-literature
TranscriptomicsTranscriptomic analysis of glycolaldehyde-treated wild type cells and a synthetic strain
A synthetic pathway for (D)-xylose assimilation was stoichiometrically evaluated regarding its potential to produce selected value-added compounds and implemented in Escherichia coli strains. The pathway proceeds via the isomerization of (D)-xylose to (D)-xylulose, the phosphorylation of (D)-xylulos...
ORGANISM(S): Escherichia coli 
2015-05-27 | E-GEOD-69265 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of 17 strains of Ralstonia solanacearum, one strain of R. syzygii and one strain of R. pickettii
comparison of gene content between 17 strains of Ralstonia solanacearum, one strain of R. syzygii and one strain of R. pickettii
ORGANISM(S): Ralstonia solanacearum 
2006-11-25 | E-MEXP-851 | biostudies-arrayexpress
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