Carcinoma associated fibroblasts

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Unknown (1033)
Transcriptomics (553)
Genomics (264)
Proteomics (72)
Other (7)
Metabolomics (6)
Methylation profiling (3)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (458)
Mus musculus (159)
Andropogon gerardi (38)
Bacteria (38)
Canis lupus familiaris (38)
Clostridium perfringens (38)
Cnidaria (38)
Cricetulus griseus (38)
Eukaryota (38)
Fasciola (38)
Hepatitis B virus (38)
Human betaherpesvirus 5 (38)
Japanese encephalitis virus group (38)
Madurella mycetomatis (38)
Mesocricetus auratus (38)
Miscanthus x giganteus (38)
Mycobacterium tuberculosis (38)
Orthoflavivirus (38)
Panicum virgatum (38)
Platyhelminthes (38)
Rattus norvegicus (7)
Macaca fascicularis (3)
Gallus gallus (3)
Macaca mulatta (2)
Toxoplasma gondii (2)
synthetic construct (2)
Canis lupus familiaris (2)
Viruses (1)
Cricetulus griseus (1)
Sus scrofa (1)

Organisms

Homo sapiens (125)
Mus musculus (35)
Canis lupus familiaris (1)
unidentified (1)

Repository

biostudies-arrayexpress (444)
ENA (199)
geo (155)
pride (38)
EGA (26)
MassIVE (22)
iProX (9)
MetaboLights (5)
jPOST (3)
GPMDB (2)
ExpressionAtlas (1)
Cell Collective (1)
GNPS (1)

Tissue

Fibroblast (16)
Cell culture (7)
Breast (6)
Epithelial cell (5)
Lung (3)
Lung epithelium (2)
Ovary cancer cell (2)
Pancreas (2)
Stromal cell (2)
Bone marrow (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Duct of salivary gland (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Endothelial cell of umbilical vein (1)
Hepatocyte (1)
Liver (1)
Macrophage (1)
Mammary gland epithelial cell (1)
Myeloid suppressor cell (1)
Ovarian serous carcinoma cell (1)
Ovarian surface epithelial cell (1)
Ovary stroma (1)
Pancreatic cancer cell (1)
Pancreatic ductal carcinoma cell (1)
Peripheral blood mononuclear cell (1)
Permanent cell line cell (1)
Primary cell (1)
T cell (1)

Disease

Normal (6)
Breast cancer (4)
Non-small cell lung carcinoma (3)
Adenocarcinoma (2)
Pancreatic ductal adenocarcinoma (2)
Not Available (2)
Head and neck squamous cell carcinoma (2)
Hepatocellular carcinoma (2)
Pancreatic ductal carcinoma (2)
Carcinoma (1)
Gastric carcinoma (1)
Perilobar nephrogenic rest (1)
CUP (1)
Chronic pancreatitis (1)
Basal cell carcinoma, Gorlin-Goltz syndrome (1)
Tumour (1)
Cancer (1)
Asbestos-related lung carcinoma (1)
Disease free (1)
Embryonal carcinoma (1)
Germ cell cancer (1)
Head and neck cancer (1)
Inflammation (1)
Lung small cell carcinoma (1)
Lung squamous cell carcinoma (1)
Ovarian carcinoma (1)
Ovarian serous carcinoma (1)
Ovary epithelial cancer (1)
Salivary gland carcinoma (1)
Seminoma (1)

Technology Type

Mass Spectrometry (38)
Shotgun proteomics (27)
Bottom-up proteomics (8)
Mass spectrometry (4)
Data-dependent acquisition (4)
Data-independent acquisition (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Affinity purification coupled with mass spectrometry proteomics (2)
DiaPASEF (2)
Gel-based experiment (2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (15)
Illumina HiSeq 2500 (14)
NextSeq 500 (10)
Illumina HiSeq 4000 (7)
Illumina NovaSeq X (4)
DNBSEQ-G400 (3)
NextSeq 550 (3)
Bio-Rad CFX96 Real-time System (2)
NA (2)
NextSeq 2000 (2)
Illumina HiSeq 2000 (2)
NextSeq 550 (Illumina). (1)
Qiagen RNEasy Mini ki (1)
BD FACSAriaIIu cell sorter (1)
Poly-T oligo-attached magnetic beads (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
Agilent TapeStation 4200 (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Qubit instrument, DNA HS kit (1)
High Sensitivity DNA kit (1)
BioRad SureCell (1)
Axon Instruments GenePix 4000B scanner (1)
IScan Illumina (1)
Becton Dickinson INFLUX (1)
Unspecified (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Unix (1)
Illumina Genome Analyzer IIx (1)

Publication Date

2014 (69)
2010 (68)
2013 (63)
2011 (52)
2024 (42)
2012 (40)
2025 (38)
2026 (34)
2023 (32)
2015 (31)
2016 (30)
2021 (28)
2022 (25)
2009 (24)
2019 (20)
2008 (19)
2007 (17)
2018 (15)
2020 (8)
2017 (8)
2006 (8)
2005 (5)
2004 (1)

CHEBI ID

CHEBI:17822 (2)
CHEBI:15611 (2)
CHEBI:16709 (2)
CHEBI:26271 (2)
CHEBI:18132 (2)
CHEBI:15846 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:15956 (2)
CHEBI:16870 (2)
CHEBI:17748 (2)
CHEBI:15428 (2)
CHEBI:17148 (2)
CHEBI:15741 (2)
CHEBI:17268 (2)
CHEBI:6650 (2)
CHEBI:28044 (2)
CHEBI:17015 (2)
CHEBI:17821 (2)
CHEBI:17154 (2)
CHEBI:30763 (2)
CHEBI:27266 (2)
CHEBI:7916 (2)

Metabolite Name

DUMP (2)
NAD+ (2)
IMP (2)
ATP (2)
AMP (2)
3-phosphoglycerate (2)
DAMP (2)
DCMP (2)
ADP (2)
Cystine (2)
UMP (2)
DTMP (2)
Arginine (2)
Lysine (2)
Lactate (2)
Tyrosine (2)
Serine (2)
Threonine (2)
NADH (2)
Glutamine (2)
C00049 (1)
Cysteine sulfinate (1)
5-phosphoribosyl-1-pyrophosphate (1)
2-ketohaxanoic acid (1)
2-Hydroxyisovalerate (1)
UDP-xylose (1)
2,3-DPG (1)
D-Ribulose-5-phosphate (1)
D-Glucose-1-phosphate (1)
Guanosine-diphosphate (1)

First Public Date

2026 (35)
2014 (31)
2024 (25)
2025 (24)
2023 (24)
2019 (15)
2022 (12)
2021 (10)
2020 (7)
2018 (5)
2017 (3)
2016 (3)
2015 (3)
2013 (2)

Study type

Transcription profiling by array (286)
RNA-seq of coding RNA (43)
ChIP-seq (21)
RNA-seq of coding RNA from single cells (19)
Comparative genomic hybridization by array (17)
Unknown experiment type (15)
Methylation profiling by array (7)
ChIP-chip by tiling array (5)
Human - High-throughput sequencing (3)
Genotyping by array (3)
ATAC-seq (3)
Other (3)
RNA-seq of total RNA (3)
Cell line - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)

Release Date

2025 (166)
2022 (151)
2023 (146)
2024 (138)
2021 (107)
2014 (82)
2013 (79)
2010 (71)
2011 (62)
2018 (61)
2016 (59)
2020 (54)
2015 (54)
2017 (49)
2019 (46)
2012 (44)
2009 (27)
2008 (23)
2026 (22)
2007 (19)
2006 (8)
2005 (6)
2004 (1)
2003 (1)
2001 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (7)
Moffitt Cancer Center Tampa, FL, USA (2)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cancer Research UK Manchester Institute Systems Oncology (1)
Department of Biochemistry, Western University, Canada (1)
Department of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland (1)
Department of Life Technologies, University of Turku, Turku, Finland (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
Human Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA Department of Pharmacology, University of Washington, Seattle, WA, USA (1)
Institut de Recherche en Cancérologie de Montpellier (1)
Institute of Molecular Medicine and Cell Research University of Freiburg Germany (1)
Institute of Veterinary Pharmacology and Toxicology, Vetsuisse Faculty, University of Zürich, Winterthurerstr. 260, 8057 Zürich, Switzerland (1)
Lab Head Proteomics Unit - CNIC - Madrid, Spain (1)
Laboratoire de Spectrométrie de Masse Protéomique (LSMP), Institut Curie, PSL Research University, France (1)
MINT UMR Inserm 1066 CNRS 6021 IBS IRIS CHU 4 rue Larrey F-49933 ANGERS France (1)
Maisonneuve-Rosemont Hospital Research Center and Department of Medicine, University of Montréal, Montréal H3C 3J7, Québec, Canada (1)
Mass Spectrometry Facility Barts Cancer Institute Lab 1.01 1st floor Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Max Planck Institute of Biochemistry Department of Proteomics and Signaltransduction Am Klopferspitz 18 D-82152 Martinsried (1)
Merck & Co., Inc. (1)
National Institute of Gastroenterology, IRCCS "S. De Bellis" Research Hospital, Castellana Grotte, 70013 Bari, Italy (1)
Professor of Biological Chemistry, Oncology and Pathology, Johns Hopkins University (1)
Proteome Research (AG Stühler) Institute of Molecular Medicine I Heinrich Heine University Düsseldorf Universitätsstraße 40225 Düsseldorf Germany (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Proteomics and metabolomics unit, Basic research department, Children's Cancer Hospital, 57357 Cairo, (CCHE-57357), Egypt (1)
Reader in Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 | Fax: +44 (0)20 7882 3891 | Email: p.cutillas@qmul.ac.uk www.bci.qmul.ac.uk/research/centre-profiles/haemato-oncology.html https://www.bci.qmul.ac.uk/en/staff/item/pedro-cutillas (1)
The Institute of Cancer Reaserach Moecular and Systems Oncology (1)
The University of Melbourne (1)
Tranlational Oncology Group, Center for Tumor Biology and Immunology, Philipps University, Marburg, Germany (1)
Université de Nantes, INSERM, CNRS, CRCI2NA, F-44000 Nantes, France (1)

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Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - primary mammary fibroblasts treated with IL1-beta

Breast cancer is still the most common type of cancer in women; an important role in carcinogenesis is actually attributed to cancer-associated fibroblasts. In this study we investigated whether it is possible to assess the functional state of cancer-associated fibroblasts through tumor tissue prote...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079966 | MassIVE

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - primary mammary fibroblasts treated with TGF-beta

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079968 | MassIVE

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - primary mammary fibroblasts

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079940 | MassIVE

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - tumor-distant tissue sections

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079950 | MassIVE

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - ZR-75-1 breast cancer cells

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079958 | MassIVE

Transcriptional profiling by array of human head and neck squamous cell carcinoma to study the correlation between galectin-1 upregulation and the presence of SMA positive cancer-associated fibroblasts

In this study, we set the presence of smooth muscle actin (SMA)-positive cancer-associated fibroblasts (CAFs) in relation to galectin-1 and its in vivo competitor (galectin-3). In squamous cell carcinomas of head and neck, upregulation of galectin-1 presence is highly significantly correlated to pre...

ORGANISM(S): Homo sapiens

2012-11-01 | E-MTAB-850 | biostudies-arrayexpress

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - bulk tumor tissue

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079947 | MassIVE

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - tumor-near tissue sections

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079953 | MassIVE

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts.

Data from ProteomeXchange, PXD ID: PXD001324. Experiment: P1, file: P1_Cyt_Near_4.mzml. Published as part of J Proteome Res. 2014 Sep 19. . From the Abstract: {{i}} Breast cancer is still the most common type of cancer in women; an important role in carcinogenesis is actually attributed to cancer-a...

ORGANISM(S): Homo_sapiens_viruses, Human_female

GPM11210030024 | GPMDB

Resource Reanalysis

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts.

Data from ProteomeXchange, PXD ID: PXD001323. Experiment: hmf_cyt_TGFb_1, file: hmf_cyt_TGFb_1_2.mzml. Published as part of J Proteome Res. 2014 Sep 19. . From the Abstract: {{i}} Breast cancer is still the most common type of cancer in women; an important role in carcinogenesis is actually attribu...

ORGANISM(S): Homo_sapiens_viruses, Human_female

GPM32320003614 | GPMDB

Resource Reanalysis

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