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TranscriptomicsRunx+ HSPC, kdrl+ endothelial, and negative cells sorted from DMSO- or Lycorine-treated 3 dpf zebrafish embryos
The zebrafish is a powerful model for the study of hematopoietic stem and progenitor cells (HSPC). We have developed a novel HSPC-specific transgenic line (Runx1+23:GFP). We have used this line in time-lapse live imaging studies to track the migration of HSPC during development. We have also perform...
ORGANISM(S): Danio rerio 
2015-01-15 | E-GEOD-56015 | biostudies-arrayexpress
TranscriptomicsComparative analysis of gene expression in 9 BXH RI strains and progenitors (B6 and C3) and BXHF1.
We hypothesize that gene expression in the lungs of this RI panel are divergent thus contributing to the disparity in their phenotypes. More specifically, (1) B6 mice tend to have a much smaller lung volume than the C3 mice while the F1 appears to be like the B6 in lung structure and function. We po...
ORGANISM(S): Mus musculus 
2011-11-26 | E-GEOD-11659 | biostudies-arrayexpress
ProteomicsProteomic profile of hippocampus regions from the pilocarpine medial temporal lobe epilepsy model
Label-free Proteomic profile of the dentate gyrus (dorsal and ventral) and CA3 (dorsal and ventral) microdissected from the hippocampus of the pilocarpine model of Mesial Temporal Lobe Epilepsy.
ORGANISM(S): Rattus Norvegicus (ncbitaxon:10116) 
2024-03-25 | MSV000094401 | MassIVE
TranscriptomicsRNA-seq of blood samples from bovines immunized with a multicomponent recombinant vaccine against cattle tick.
Tick infestations by Rhipicephalus microplus, the cattle tick, cause enormous losses to health and animal production. Ticks induce immune response in their hosts; therefore their immunobiological control is feasible. The available anti-tick vaccines display variable efficacy and short-lived, encoura...
ORGANISM(S): Bos taurus 
2019-12-15 | E-MTAB-8022 | biostudies-arrayexpress
GenomicsICGC Oesophageal Adenocarcinoma sequence data - TLR_pathway_study - samples
upcoming publication
EGAD00001001960 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - dcc_release_28 - samples
WGS sequencing for 409 cases (832 samples) from the ICGC ESAD-UK project Tumours 50x Normals 30x HiSeq X BAM files These samples are all available in ICGC release 28
EGAD00001004137 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - 100_all_samples - samples
All samples from the "100" project
EGAD00001001457 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - 129_cohort - samples
Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - 129_cohort EAC whole genomic sequencing data - Publication Secrier & Li et al., 2016, Nature Genetics
EGAD00001002218 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - 100 - samples
Samples from the "100" project that are in the ICGC PanCancer project.
EGAD00001001071 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - mobile_elements - samples
Samples from Edwards et al 2015 - doi:10.1186/s12864-015-1685-z
EGAD00001001048 | EGA
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