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TranscriptomicsTranscriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation
Background: The ability of Clostridium thermocellum ATCC 27405 wild-type strain to hydrolyze cellulose and ferment the degradation products directly to ethanol and other metabolic byproducts makes it an attractive candidate for consolidated bioprocessing of cellulosic biomass to biofuels. In this st...
ORGANISM(S): Clostridium thermocellum ATCC 27405 
2011-05-27 | E-GEOD-29554 | biostudies-arrayexpress
TranscriptomicsExpression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose
This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bac...
ORGANISM(S): Ruminococcus flavefaciens FD-1 
2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress
TranscriptomicsDeciphering regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa
Hemicellulose, the second most abundant plant biomass fraction after cellulose, is widely viewed as a potential feedstock for the production of liquid fuels and other value-added materials. Degradation of hemicellulose by filamentous fungi requires production of many different enzymes, which are ind...
ORGANISM(S): Neurospora crassa 
2012-03-26 | E-GEOD-34098 | biostudies-arrayexpress
TranscriptomicsDecoding the black box of cellulase formation in Hypocrea jecorina by RNA-Seq analysis
Hypocrea jecorina (anamorph Trichoderma reesei) is one of the most well studied fungi used in biotechnology industry. This fungus is today a paradigm for the comercial scale production of different plant cell wall degrading enzymes, mainly cellulases and hemicellulases. The objective of this study w...
ORGANISM(S): Trichoderma reesei 
2014-04-01 | E-GEOD-53629 | biostudies-arrayexpress
ProteomicsDecoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199
The search for new enzymes and microbial strains to degrade plant biomass is one of the most important strategies for improving the conversion processes in the production of environment-friendly chemicals and biofuels. In this study, we report a new Paenibacillus isolate, O199, which showed the high...
ORGANISM(S): Paenibacillus sp. 
2016-04-26 | PXD003970 | Pride
Proteomics Gelc-ms/ms Cellulose degradation 
TranscriptomicsEvidence of a critical role for cellodextrin transporter 2 (CDT-2) in both cellulose and hemicellulose degradation and utilization in Neurospora crassa
CDT-1 and CDT-2 are two cellodextrin transporters discovered in the filamentous fungus Neurospora crassa. Previous studies focused on characterizing the role of these transporters in only a few conditions, including cellulose degradation, and the function of these two transporters is not yet complet...
ORGANISM(S): Neurospora crassa 
2014-09-25 | E-GEOD-44673 | biostudies-arrayexpress
TranscriptomicsTranscriptomic and proteomic analyses of Clostridium termitidis CT1112 during growth on ?-cellulose, xylan, cellobiose and xylose.
High throughput “omics technologies” such as transcriptomics and proteomics provide insights into the metabolic potential of an organism and have been used to understand the genetic and the central carbon metabolism mechanisms for the production of desired end products in various cellulolytic clostr...
ORGANISM(S): [Clostridium] termitidis CT1112 
2015-05-01 | E-GEOD-66125 | biostudies-arrayexpress
TranscriptomicsCellulose-induced and Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes
This SuperSeries is composed of the following subset Series: GSE14734: Cellulose-induced regulation of Phanaerochaete chrysosporium genes GSE14735: Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes Refer to individual Series
ORGANISM(S): Phanerochaete chrysosporium 
2009-03-30 | E-GEOD-14736 | biostudies-arrayexpress
TranscriptomicsInvestigation of barley brittle stem mutants
The barley brittle stem mutants, fs2, designated X054 and M245, have reduced levels of cellulose compared with their isogenic parents Ohichi and Shiroseto. A custom-designed microarray, based on Agilent technology and including genes involved in cell wall metabolism, was used to compare transcript ...
ORGANISM(S): Hordeum vulgare 
2010-07-23 | E-GEOD-17873 | biostudies-arrayexpress
ProteomicsTemporal proteome analysis of Clostridium cellulovorans
In order to elucidate the temporal proteome dynamics of C. cellulovorans, we performed quantitative proteome analysis in a different growth phase with five carbon sources (glucose, cellulose, xylan, galactomannan, and pectin).
ORGANISM(S): Clostridium Cellulovorans 743b 
2019-04-22 | PXD010977 | JPOST Repository
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