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MetabolomicsCore microbes are ecological generalists supporting the host and ecosystem functionality and stability
Core gut microbes persist across diverse gut ecosystems, raising the central question in microbiome research of what defines core microbes and the factors driving their persistence across hosts? Using the rumen microbiome as a model system, our study reveals that core microbes exhibit distinct attri...
2025-05-23 | MTBLS11446 | MetaboLights
MetabolomicsRegional HNSCC metabolomics reveals widespread changes to one-carbon metabolism and S-adenosylmethionine metabolism across tumour core, tumour edge and adjacent non-tumour tissues

Cancer, including head and neck squamous cell carcinoma (HNSCC), induces changes to metabolism that drive the disease. Regional metabolomics can help to understand metabolic variation across the tumour including changes near the tumour core, where hypoxia is likely more pronounced. We apply ultra...

2026-06-03 | MTBLS1905 | MetaboLights
MetabolomicsFoHsf1 reprograms central metabolism via caffeine and vitamin D2 to modulate development and virulence of Fusarium oxysporum on Polygonatum kingianum
Root rot has severely affected the yield and quality of Polygonatum kingianum, and Fusarium oxysporum has been identified as the primary causal agent. To explore the virulence mechanisms of this pathogen, we performed a functional characterization of FoHsf1, a gene encoding a heat shock transcriptio...
2026-04-11 | MTBLS14221 | MetaboLights
ProteomicsIdentification of Chlamydomonas centriolar central core proteins reveals a role for human WDR90 in ciliogenesis
Centrioles are evolutionary conserved macromolecular structures that are fundamental for templating the formation of cilia and flagella, as well as for assembling centrosomes. Centrioles are nine-fold symmetrical microtubule-based cylindrical structures, which have three regions that can be clearly ...
ORGANISM(S): Chlamydomonas reinhardtii 
2018-06-12 | PXD005818 | Pride
Chlamydomonas Basal bodies Centrioles Central core Ciliogenesis Super-resolution microscopy 
ProteomicsMolecular Insights into Central Core Disease: Proteomic Signatures and Potential Therapeutic Biomarkers in RYR1 I4895T Mice
Central Core Disease (CCD) is a congenital myopathy, predominantly caused by mutations in the gene encoding for ryanodine receptor type-1(RYR1), the intracellular Ca2+ release channel embedded in skeletal muscle sarcoplasmic reticulum membrane. One of the most common RYR1 mutations associated to CCD...
ORGANISM(S): Mus musculus (Mouse) 
2025-12-22 | PXD069980 | Pride
Oxidative phosphorylation Myosin fragments Central core disease Glycolysis Pgc1α 
ProteomicsSkeletal Muscle TFEB Signaling Promotes Central Nervous System Function and Reduces Neuroinflammation during Aging and Neurodegenerative Disease
Skeletal muscle has recently arisen as a novel regulator of Central Nervous System (CNS) function and aging, secreting bioactive molecules known as myokines with metabolism-modifying functions in targeted tissues, including the CNS. Here we report the generation of a novel transgenic mouse with enha...
ORGANISM(S): Mus Musculus 
2023-12-06 | PXD045241 | panorama
GenomicsNext generation trophoblast organoids with apical-out trophoblast polarity and central villous core-like cavity
Next generation trophoblast organoids with apical-out trophoblast polarity and central villous core-like cavity
PRJNA1137241 | ENA
GenomicsFOXA and master transcription factors recruit Mediator and Cohesin to the core transcriptional regulatory circuitry of cancer cells
The Mediator and Cohesin complexes control the cellular transcriptional program. However, it is not well understood how they are recruited to regulatory regions. Our study shows that the core transcriptional regulatory circuitry of cancer cells is essential to recruit Mediator, Cohesin and NIPBL to ...
ORGANISM(S): Homo sapiens 
2016-10-24 | E-GEOD-76893 | biostudies-arrayexpress
TranscriptomicsLimbal and Central Corneal Epithelia
Limbal and central regoins of the rat cornea epithelium were used to constract 2 SAGE libraries, in order to identify candidate genes to distinguish stem cell from differentiated central cornea epithelium cells. Keywords: gene expression SAGE-based, count cornea epithelium was scraped from central ...
ORGANISM(S): Rattus norvegicus 
2006-05-15 | E-GEOD-4121 | biostudies-arrayexpress
TranscriptomicsDifferentiation state-specific mitochondrial dynamic regulatory networks are revealed by global transcriptional analysis of the developing chicken lens.
The mature eye lens contains a surface layer of epithelial cells called the lens epithelium that require a functional mitochondrial population to maintain the homeostasis and transparency of the entire lens. The lens epithelium overlies a core of terminally differentiated fiber cells that must degr...
ORGANISM(S): Gallus gallus 
2014-07-02 | E-GEOD-53976 | biostudies-arrayexpress
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