Chan L L - OmicsDI

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Unknown (10673)
Transcriptomics (460)
Proteomics (230)
Genomics (160)
Metabolomics (24)
Genomic (4)
Models (3)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (397)
Mus musculus (124)
Arabidopsis thaliana (21)
Saccharomyces cerevisiae (20)
Rattus norvegicus (11)
Bifidobacterium breve UCC2003 (6)
Mycobacterium tuberculosis (6)
Ruegeria pomeroyi DSS-3 (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Drosophila melanogaster (3)
Helicoverpa zea (2)
Phalaenopsis aphrodite subsp. formosana (2)
Oryza sativa (2)
Ovis aries (2)
cellular organisms (1)
Acropora digitifera (1)
Brucella abortus str. 2308 A (1)
Bifidobacterium breve (1)
Arabidopsis (1)
Candidatus Pelagibacter ubique HTCC1062 (1)
Nicotiana attenuata (1)
Orientia tsutsugamushi (1)
Mustela putorius furo (1)
Brassica rapa subsp. pekinensis (1)
Tetraodon nigroviridis (1)
Taeniopygia guttata (1)
Macaca mulatta (1)
Brassica napus (1)
Daphnia magna (1)
Mus musculus domesticus (1)

Organisms

Mus musculus (5)
Homo sapiens (3)
Mustela putorius furo (1)

Repository

biostudies-arrayexpress (502)
pride (143)
EGA (108)
MassIVE (32)
MetaboLights (23)
jPOST (20)
PAXDB (17)
ENA (14)
iProX (12)
dbGaP (4)
BioModels (3)
PanoramaPublic (3)
geo (1)
GNPS (1)
GPMDB (1)
PeptideAtlas (1)

Tissue

Cell culture (34)
Epithelial cell (15)
B cell (9)
Brain (8)
Bone marrow (5)
Intervertebral disc (4)
Cell suspension culture (4)
Lung (4)
Blood (4)
Mammary gland (3)
Breast cancer cell (3)
Whole body (3)
Permanent cell line cell (3)
Type II pneumocyte (2)
Seed (2)
Extracellular vesicle (2)
Urine (2)
Skin (2)
Ovary (2)
Leukocyte (2)
Heart (2)
Cell line cell (2)
Blood plasma (2)
HeLa cell (2)
Testis (2)
Kidney (2)
Liver (2)
Blood cell (2)
Colon (2)
Female Reproductive System (1)

Disease

Breast cancer (13)
Acute leukemia (9)
Severe acute respiratory syndrome (3)
Lymphoma (3)
Cervix carcinoma (3)
Colon cancer (3)
Acute myeloid leukemia (2)
Lung adenocarcinoma (2)
Oligodendroglioma (2)
Plasmodium falciparum malaria (2)
Parkinson's disease (2)
Wounds and Injuries (2)
Disease free (2)
Bacterial infectious disease (1)
Wild type (1)
Breast Carcinoma (1)
Angiogenic chondrosarcoma (1)
Invasive ductal carcinoma (1)
Normal (1)
Not Available (1)
Developmental and epileptic encephalopathy 2 (1)
Dry eye syndrome (1)
Septic shock (1)
Scoliosis (1)
Alzheimer's disease 1 (1)
Neurodevelopmental abnormality (1)
Celiac disease (1)
Pancreatic ductal carcinoma (1)
Age related macular degeneration (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (143)
Shotgun proteomics (65)
Bottom-up proteomics (35)
Affinity purification coupled with mass spectrometry proteomics (23)
Mass spectrometry (19)
Data-dependent acquisition (16)
Gel-based experiment (11)
SWATH MS (7)
Mass spectrometry assay (4)
Data-independent acquisition (4)
Illumina HiSeq 2000 (3)
Top-down proteomics (3)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
MSE (1)
DiaPASEF (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (14)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 2500 (7)
Q Exactive (7)
Orbitrap Fusion Lumos (6)
LTQ Orbitrap Velos (6)
LTQ Orbitrap Elite (4)
Orbitrap Eclipse (4)
Illumina NovaSeq X (3)
Q Exactive HF (3)
NextSeq 2000 (2)
Illumina HiSeq 4000 (2)
Orbitrap Astral (2)
NEBNext Ultra II RNA Library Prep Kit (1)
NEBNext Globin and rRNA Depletion Kit (1)
PAXgene Blood RNA tubes (1)
Agilent microarray Scanner (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
PacBio RS II (1)
AB SOLiD 4 System (1)
ScanArray [PerkinElmer] (1)
Other (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Agilent NGS Workstation (1)
HiSeq X Ten (1)
NextSeq 500 (1)
Instrument (1)

Publication Date

2013 (85)
2010 (72)
2012 (62)
2025 (61)
2014 (57)
2011 (48)
2022 (41)
2015 (35)
2020 (34)
2026 (33)
2008 (31)
2023 (30)
2016 (29)
2021 (23)
2007 (21)
2024 (20)
2019 (20)
2009 (16)
2018 (9)
2006 (8)
2005 (8)
2017 (6)
2002 (1)

UNIPROT ID/AC

KLK10_HUMAN (17)
CUZD1_HUMAN (17)
UD18_HUMAN (17)
CHIN_HUMAN (17)
AT5G2_HUMAN (17)
WIPF3_HUMAN (17)
WASF1_HUMAN (17)
HDGR2_HUMAN (17)
LRAT2_HUMAN (17)
CI114_HUMAN (17)
ZC11A_HUMAN (17)
LIRB5_HUMAN (17)
BIN2_HUMAN (17)
DPEP1_HUMAN (17)
TBCD4_HUMAN (17)
COL_HUMAN (17)
RT18B_HUMAN (17)
DHB7_HUMAN (17)
IFT88_HUMAN (17)
CH3L1_HUMAN (17)
RPAC2_HUMAN (17)
TRAD1_HUMAN (17)
RBM33_HUMAN (17)
DHX16_HUMAN (17)
ORC4_HUMAN (17)
ALBU_HUMAN (17)
RHG04_HUMAN (17)
GOGA1_HUMAN (17)
P29350 (1)
P06239 (1)

ENSEMBL ID

ENSG00000204131 (1)
ENSG00000147251 (1)
ENSG00000229353 (1)
ENSG00000247315 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (7)
CHEBI:7916 (6)
CHEBI:15756 (6)
CHEBI:15428 (6)
CHEBI:18257 (6)
CHEBI:25017 (6)
CHEBI:30805 (5)
CHEBI:27432 (5)
CHEBI:28875 (5)
CHEBI:28842 (5)
CHEBI:16196 (5)
CHEBI:16113 (5)
CHEBI:17268 (5)
CHEBI:17568 (5)
CHEBI:16750 (5)
CHEBI:15741 (5)
CHEBI:6650 (5)
CHEBI:27266 (5)
CHEBI:18237 (5)
CHEBI:17154 (5)
CHEBI:28044 (5)
CHEBI:30813 (4)
CHEBI:72736 (4)
CHEBI:15584 (4)
CHEBI:16411 (4)
CHEBI:18183 (4)
CHEBI:64483 (4)
CHEBI:64561 (4)
CHEBI:17992 (4)
CHEBI:32365 (4)

Metabolite Name

Ornithine (4)
PI 36:1 (3)
PI 34:1 (3)
PG 36:1 (3)
PC 35:0 (3)
PS 36:2 (3)
PS 36:1 (3)
PC 34:0 (3)
PC 33:1 (3)
PC 31:0 (3)
PC 33:0 (3)
PG 36:2 (3)
PG 34:2 (3)
PG 34:1 (3)
PE 36:3 (3)
PE 36:1 (3)
PE 34:3 (3)
PC 38:2 (3)
PC 36:3 (3)
PC 36:2 (3)
PC 35:2 (3)
PC 34:3 (3)
PC 34:2 (3)
PC 34:1 (3)
PC 33:2 (3)
PC 32:0 (3)
PI 36:2 (3)
PI 36:3 (3)
PE 34:1 (3)
PE 36:2 (3)

First Public Date

2025 (3)
2026 (2)
2024 (2)
2023 (2)
2017 (2)
2022 (1)
2018 (1)
2014 (1)

Modelling Approach

Random forest procedure (1)
Computational model (1)
Ordinary differential equation model (1)

Lab affiliation

The University of Melbourne (5)
Center of Molecular and Cellular Oncology, Yale University (4)
Chan Zuckerberg Biohub (3)
Institute of Cancer Research, London (3)
The Institute of Cancer Research (3)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
School of Optometry, The Hong Kong Polytechnic University (2)
Department of Genetics, Stanford University (2)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (2)
Cancer Science Institute of Singapore, National University of Singapore, Singapore (2)
School of Biomedical Sciences, The University of Hong Kong (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
UMass Chan Medical School (2)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (2)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (2)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (2)
School of biological Sciences, Nanyang Technological University, Singapore 637551 (2)
University of the Pacific (2)
Functional Proteomics, ICR (2)
Princess Margaret Cancer Centre, University Health Network, M5G 1L7, Toronto, Canada (1)
Laboratory of Cellular and Structural Biology (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, P. R. China. (1)
Macquarie Medical School (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
Discovery Proteomics, Genentech (1)
Professor, Department of Biochemistry & Molecular Biology Director, Life Sciences Institute University of British Columbia Vancouver, BC, Canada (1)
UTHealth Houston, Texas, USA (1)
Program in Molecular Medicine UMass Chan Medical School Worcester MA 01605 USA (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, Monrovia, CA, USA (1)

IsPrivate

False (3)

Submitter Keywords

Machine Learning Model (2)
FAIR-AIML (1)

Modification

2x(15)N labeled L-lysine (5)
4x(15)N labeled L-arginine (4)
N6 (2)
N6-dimethyl-L-lysine (2)
Not available (1)

Study type

Transcription profiling by array (297)
RNA-seq of coding RNA (47)
ChIP-seq (28)
Unknown experiment type (21)
Comparative genomic hybridization by array (20)
Methylation profiling by array (13)
Transcription profiling by RT-PCR (10)
ChIP-chip by tiling array (8)
Genotyping by array (8)
Other (7)
ChIP-chip by array (6)
Methylation profiling by high throughput sequencing (6)
DNA-seq (4)
RNA-seq of non coding RNA (4)
Transcription profiling by SAGE (2)
Cell line - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
MicroRNA profiling by array (2)
Proteomic profiling by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (1333)
2025 (1269)
2023 (1252)
2021 (1204)
2024 (1123)
2020 (903)
2019 (721)
2018 (650)
2017 (548)
2016 (464)
2015 (337)
2014 (242)
2013 (220)
2026 (178)
2012 (165)
2011 (154)
2010 (138)
2009 (77)
2008 (77)
2007 (46)
2006 (25)
2005 (23)
2004 (9)
2000 (5)
2002 (4)
2003 (4)
2001 (3)
1998 (1)

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Cu-NHC Complex for Chan-Evans-Lam Cross-Coupling Reactions of <i>N</i>-Heterocyclic Compounds and Arylboronic Acids.

Not available

S-EPMC12889171 | biostudies-literature

Transcription profiling of murine leukemic T cells from Ikaros-deficient mice and wild type mice to identify critical gene expression events during T-cell leukemogenesis.

The experiment was to compare leukemic T cells from thymic lymphomas from homozygote mice for the IkL/L hypomorphic mutation and non-transformed thymocytes, either of WT or IkL/L genotype. The aim was to identify a gene expression signature specific to the IkL/L tumors.

ORGANISM(S): Mus musculus

2007-09-04 | E-GEOD-2501 | biostudies-arrayexpress

Discovering novel bile protection systems in Bifidobacterium breve UCC2003 through functional genomics

Tolerance of gut commensals to bile salt exposure is an important feature for their survival in and colonization of the intestinal environment. A transcriptomic approach was employed to study the response of Bifidobacterium breve UCC2003 to bile, allowing the identification of a number of bile-induc...

ORGANISM(S): Bifidobacterium breve UCC2003

2011-12-16 | E-GEOD-31032 | biostudies-arrayexpress

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Ten-year changes in plasma L-carnitine levels and risk of coronary heart disease.

Not available

S-EPMC9208674 | biostudies-literature

WT and Ikaros-deficient follicular B cells stimulated with anti-IgM

We have observed that follicular B cells from mice with a hypomorphic mutation (IkL/L) in the Ikzf1 gene (which encodes the Ikaros transcription factor) exhibit an increased proliferative response to anti-IgM stimulation (Kirstetter et al, Eur J Immunol, 32:720-30, 2002). We asked if Ikaros controls...

ORGANISM(S): Mus musculus

2016-01-26 | E-GEOD-75712 | biostudies-arrayexpress

DC-SIGN and L-SIGN: the SIGNs for infection.

Not available

S-EPMC7079906 | biostudies-literature

Chan-Chuang and resistance exercise for drug rehabilitation: a randomized controlled trial among Chinese male methamphetamine users.

Not available

S-EPMC10642185 | biostudies-literature

Effect of l-caldesmon on osteoclastogenesis in RANKL-induced RAW264.7 cells.

Not available

S-EPMC5993584 | biostudies-literature

Complete Genome Sequence of Streptomyces sp. TN58, a Producer of Acyl Alpha-l-Rhamnopyranosides.