Chen Chan C - OmicsDI

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Unknown (2154)
Proteomics (69)
Transcriptomics (46)
Genomics (14)
Metabolomics (7)
Multiomics (1)

Organisms

Bombyx mori (50)
Schizosaccharomyces pombe (50)
Human immunodeficiency virus 1 (50)
Oryza sativa Indica Group (50)
Sinorhizobium meliloti BL225C (50)
Sus scrofa domesticus (50)
Ostreococcus tauri (50)
Saccharomyces cerevisiae (50)
Vitis vinifera (50)
Staphylococcus aureus (50)
Rattus norvegicus (50)
Escherichia coli (50)
Candida albicans (50)
Cyanophora paradoxa (50)
Bursaphelenchus xylophilus (50)
Pseudomonas aeruginosa SJTD-1 (50)
Homo sapiens (42)
Mus musculus (13)
Arabidopsis thaliana (4)
Brucella abortus str. 2308 A (1)
Macaca mulatta (1)
Oryza sativa (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)
Boehmeria tricuspis (1)
Triticum aestivum (1)
Bos taurus (1)
Xanthomonas oryzae pv. oryzae (1)

Repository

biostudies-arrayexpress (50)
pride (50)
EGA (10)
MassIVE (9)
iProX (7)
MetaboLights (7)
jPOST (2)
PanoramaPublic (1)

Tissue

Cell culture (9)
Intervertebral disc (3)
Plant cell (3)
Epithelial cell (3)
Mammary gland (2)
Embryo (2)
Kidney (2)
Umbilical vein endothelium (1)
Ovarian surface epithelial cell line (1)
Conjunctiva (1)
Ovarian surface epithelial cell (1)
Oligodendrocyte (1)
Pluripotent stem cell (1)
Natural killer cell (1)
Brown fat cell (1)
Vitreous humor (1)
Embryonic stem cell (1)
Cerebrospinal fluid (1)
Ovary (1)
Cardiac muscle cell (1)
Heart (1)
Brain (1)
Cell suspension culture (1)
Root (1)
HeLa cell (1)
Whole body (1)
Fibroblast (1)
Permanent cell line cell (1)
B cell (1)
Liver (1)

Disease

Breast cancer (3)
Disease free (2)
Oligodendroglioma (1)
Immune system disease (1)
Dry eye syndrome (1)
Capillary leak syndrome (1)
Pancreatic ductal carcinoma (1)
Lymphoma (1)
Cardiovascular system disease (1)
Parkinson's disease (1)
Glioblastoma (1)
Malignant neoplasm of ovary (1)
Wounds and Injuries (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (50)
Shotgun proteomics (21)
Bottom-up proteomics (14)
Mass spectrometry (6)
SWATH MS (5)
Data-dependent acquisition (5)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (3)
SRM/MRM (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
MSE (1)
Data-independent acquisition (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (4)
LTQ Orbitrap Velos (3)
Liquid Chromatography MS - negative - reverse phase (3)
LTQ Orbitrap Elite (2)
Orbitrap Fusion Lumos (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap XL (1)
Q Exactive Plus (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
TripleTOF 5600 (AB Sciex) (1)

Publication Date

2022 (13)
2013 (12)
2026 (11)
2015 (10)
2023 (8)
2020 (7)
2010 (7)
2025 (7)
2019 (7)
2021 (7)
2012 (6)
2014 (4)
2024 (4)
2017 (3)
2016 (3)
2011 (3)
2007 (3)
2008 (2)
2005 (2)
2018 (2)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:9047 (2)
CHEBI:81321 (2)
CHEBI:131740 (2)
CHEBI:131739 (2)
CHEBI:72998 (2)
CHEBI:36090 (2)
CHEBI:19475 (2)
CHEBI:26271 (2)
CHEBI:18237 (2)
CHEBI:17126 (2)
CHEBI:18186 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:64489 (2)
CHEBI:73506 (2)
CHEBI:16870 (2)
CHEBI:25017 (2)
CHEBI:30832 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:28044 (2)
CHEBI:17154 (2)
CHEBI:37024 (2)
CHEBI:16865 (2)
CHEBI:30763 (2)
CHEBI:27266 (2)
CHEBI:7916 (2)
CHEBI:15366 (2)
CHEBI:27897 (2)
CHEBI:15756 (2)

Metabolite Name

Norvaline (2)
Methionine (2)
Tyrosine (2)
Glutamine (2)
Neg_9.75_263.983 (1)
Neg_9.74_728.246 (1)
Neg_9.71_269.99 (1)
Neg_9.7_314.245 (1)
Neg_9.69_330.24 (1)
Neg_9.68_358.1 (1)
Neg_9.68_290.112 (1)
Neg_9.68_222.125 (1)
Neg_9.67_398.227 (1)
Neg_9.58_222.089 (1)
Neg_9.51_388.293 (1)
Neg_9.45_330.24 (1)
Neg_9.24_862.252 (1)
Neg_9.22_445.982 (1)
Neg_9.22_433.983 (1)
Neg_9.22_429.972 (1)
Neg_9.22_363.979 (1)
Neg_9.22_295.993 (1)
Neg_9.22_249.983 (1)
Neg_9.03_230.151 (1)
Neg_8_610.128 (1)
Neg_8_496.136 (1)
Neg_8_396.212 (1)
Neg_8.95_379.293 (1)
Neg_8.84_288.229 (1)
Neg_8.81_347.985 (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (26)
Unknown experiment type (7)
RNA-seq of coding RNA (6)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
DNA-seq (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (279)
2025 (261)
2024 (237)
2023 (236)
2021 (232)
2020 (183)
2018 (141)
2019 (112)
2016 (104)
2017 (102)
2015 (82)
2013 (44)
2026 (40)
2014 (37)
2012 (23)
2011 (23)
2010 (23)
2009 (13)
2008 (9)
2007 (8)
2005 (6)
2006 (2)
2004 (2)
1997 (2)
2003 (1)
2002 (1)
1998 (1)

Lab affiliation

School of Optometry, The Hong Kong Polytechnic University (2)
Lung and Vascular Inflammation Section, Laboratory of Allergic Diseases, NIAID/NIH Bethesda, MD 20892, USA (2)
School of Biomedical Sciences, The University of Hong Kong (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
The Chinese University of Hong Kong (2)
Institute for Cell Engineering, Department of Neurology, Johns Hopkins University School of Medicine (1)
Meng Lab, Department of Basic Research, Guangzhou National Laboratory, No.9, XingDaoHuanBei Road, Guangzhou International Bio-island, Haizhu District Guangzhou, Guangdong, 510005, China (1)
Assistant Professor, Dept of Obstetrics & Gynaecology, Faculty of Medicine, The Ubiversity of Hong Kong (1)
School of Biological Sciences, The University of Hong Kong (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, P. R. China. (1)
Discovery Proteomics, Genentech (1)
UTHealth Houston, Texas, USA (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, Monrovia, CA, USA (1)
The Center for Chemical Biology, Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA Singapore-MIT Alliance for Research and Technology Antimicrobial Resistance Interdisciplinary Research Group, Singapore 138602 (1)
Singapore Immunology Network (SIgN), Agency for Science, Technology and Research, Singapore 138648, Singapore (1)
Sunnybrook Research Institute, Toronto, ON, Canada / Department of Biochemistry, University of Toronto, Toronto, ON, Canada / Department of Biochemistry and Molecular Biology, Alberta Children’s Hospital Research Institute, Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada / Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Pathology, Johns Hopkins University School of Medicine (1)
Senior Principal Research Scientist, Head, Ocular Proteomics Platform Singapore Eye Research Institute Singapore (1)
Institute of Biological Chemistry (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory (1)
Department of Pharmacology, Feinberg School of Medicine, Northwestern University (1)
Proteome Exploration Laboratory, California Institute of Technology, Pasadena, CA, USA (1)
Regeneron Pharmaceuticals, Tarrytown, NY (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (1)
1. Harvard T.H. Chan School of Public Health, Boston, MA 02115 (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark (1)

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Copper(ii)-catalyzed synthesis of multisubstituted indoles through sequential Chan-Lam and cross-dehydrogenative coupling reactions.

Not available

S-EPMC9055228 | biostudies-literature

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Extending the coverage of Lys-C/trypsin-based bottom-up proteomics using cysteine S-aminoethylation

In this study, S-aminoethylation of Cys (AE-Cys) was carried out with 2-bromoethylamine to form pseudo-Lys, which was then digested with Lys-C or trypsin to improve proteome coverage in bottom-up proteomics. A model study with bovine serum albumin showed that the C-terminal side of Cys was successfu...

ORGANISM(S): Homo Sapiens (human) Bos Taurus

2023-09-27 | PXD045433 | JPOST Repository

C-Myb+ erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages

Although classified as hematopoietic cells, tissue-resident macrophages are selfrenewing and maintained independently of adult hematopoiesis. While most macrophages originate from embryonic precursors that seed tissues prior to birth, their exact origin is unknown. Using an in utero macrophage deple...

ORGANISM(S): Mus musculus

2015-04-23 | E-GEOD-66970 | biostudies-arrayexpress

Gastric Cancer Study GC_126

126 gastric tissues (90 tumor, 14 lymphnode and 22 normal) assayed using 44K human arrays against common reference (CRG). Published by Leung et al, PNAS, 2002 (PubMed ID 12456890) and Chen et al, MBC, 2003. A clinical history design type is where the organisms clinical history of diagnosis, treatmen...

ORGANISM(S): Homo sapiens

2010-06-10 | E-GEOD-2701 | biostudies-arrayexpress

Normal colon top vs colon crypts

The study is to define the genetic programs of human colonic cell differentiation, and to identify candidate markers for colonic stem cells and stem cell niche The study assayed the expression of 9 paired normal colon top versus crypts. Set of arrays organized by shared biological context, such as o...

ORGANISM(S): Homo sapiens

2007-08-28 | E-GEOD-6894 | biostudies-arrayexpress

Phase I trial of lenalidomide and CCI-779 in patients with relapsed multiple myeloma: evidence for lenalidomide-CCI-779 interaction via P-glycoprotein.

Not available

S-EPMC3164245 | biostudies-literature

The complete mitogenome of the blackgill catshark, Parmaturus melanobranchus (Chan, 1966).

Not available

S-EPMC8284142 | biostudies-literature

Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria

Background

Antibiotic treatment has a well-established detrimental effect on the gut bacterial composition, but effects on the fungal community are less clear. Bacteria in the lumen of the gastrointestinal tract may limit fungal colonization and invasion. Antibiotic drugs t...

2020-09-28 | MTBLS1846 | MetaboLights

Transcription profiling of C. elegans daf-19(+) and daf-19(-) mutants

By screening for genes possessing canonical X-box sequences in promoters of three Caenorhabditis species, namely C. elegans, C. briggsae and C. remanei, we identified 93 genes (including known X-box regulated genes) that encode putative components of ciliated neurons in C. elegans and are subject to...

ORGANISM(S): Caenorhabditis elegans

2008-06-14 | E-GEOD-6563 | biostudies-arrayexpress

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