Chen Na N - OmicsDI

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Unknown (1231)
Transcriptomics (210)
Proteomics (102)
Genomics (74)
Metabolomics (37)
Other (3)
Multiomics (3)
Genomic (1)

Organisms

Homo sapiens (154)
Mus musculus (68)
Rattus norvegicus (30)
Drosophila melanogaster (23)
Arabidopsis thaliana (12)
Oryza sativa (8)
Drosophila yakuba (6)
Drosophila simulans (6)
Apostichopus japonicus (4)
Drosophila pseudoobscura (4)
Sus scrofa (3)
Danio rerio (3)
groundwater metagenome (2)
Schizosaccharomyces pombe (2)
Caenorhabditis elegans (2)
Saccharomyces cerevisiae (2)
Cereibacter sphaeroides (1)
Rhodococcus opacus (1)
Pseudomonas aeruginosa TBCF10839 (1)
Trichinella spiralis (1)
Sphingomonas paucimobilis (1)
uncultured organism (1)
Solanum pimpinellifolium (1)
Gossypium barbadense (1)
Cucumis sativus (1)
Clostridium botulinum (1)
Senecio chrysanthemifolius (1)
Brassica napus (1)
Senecio squalidus subsp. squalidus (1)
Chlamydomonas reinhardtii (1)

Repository

biostudies-arrayexpress (271)
pride (43)
MetaboLights (37)
iProX (26)
MassIVE (16)
PeptideAtlas (16)
EGA (14)
GPMDB (3)
dbGaP (1)
jPOST (1)

Tissue

Plasma Non-glyco (11)
Cell culture (10)
Brain (5)
Liver (4)
Others (3)
Blood plasma (3)
Lung (3)
Plant cell (3)
Shoot (3)
Male Reproductive System (2)
Colon (2)
Epithelial cell (2)
Heart (2)
Kidney (2)
Prostate gland (2)
Spleen (2)
Blood platelet (1)
Blood serum (1)
Brown adipose tissue (1)
Cerebrospinal fluid (1)
Corneal endothelial cell (1)
Endothelium (1)
Jejunum (1)
Leaf (1)
Macrophage (1)
Permanent cell line cell (1)
Root (1)
Skeletal muscle (1)
Small intestine (1)
Sweat gland (1)

Disease

Not Available (3)
Disease free (2)
Hepatocellular carcinoma-non tumorous region (1)
Diffuse large B-cell lymphoma (1)
None- acute control (1)
None- Acute Control (1)
Breast cancer (1)
Capillary leak syndrome (1)
Colon cancer (1)
Hemorrhagic stroke (1)
Human immunodeficiency virus infectious disease (1)
Ischemic stroke (1)
Lung carcinoma (1)
Prostate cancer (1)
Stroke (1)

Technology Type

Mass Spectrometry (43)
Mass spectrometry (32)
Shotgun proteomics (25)
Bottom-up proteomics (9)
Data-dependent acquisition (5)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
Affinity proteomics (2)
Data-independent acquisition (2)
Olink affinity proteomics (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
RNA mass spectrometry (1)
SWATH MS (1)

Instrument Platform

LTQ Orbitrap Velos (14)
Liquid Chromatography MS - positive - reverse phase (12)
Illumina NovaSeq 6000 (7)
Illumina HiSeq 2500 (6)
Q Exactive (6)
Liquid Chromatography MS - negative - reverse-phase (6)
LTQ Orbitrap Elite (5)
Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Illumina HiSeq 2000 (4)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive (4)
Liquid Chromatography MS - positive - hilic (4)
Illumina HiSeq 4000 (3)
Instrument (3)
Orbitrap Fusion Lumos (3)
Axon GenePix 4000B scanning hardware (2)
NextSeq 500 (2)
Liquid Chromatography MS - negative (2)
BGIseq500 (1)
BD Influx (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
LTQ (1)
LTQ Orbitrap (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)

Publication Date

2010 (48)
2015 (35)
2012 (33)
2011 (26)
2005 (26)
2014 (24)
2023 (22)
2024 (20)
2022 (20)
2025 (17)
2016 (17)
2013 (17)
2026 (16)
2019 (16)
2006 (12)
2009 (11)
2021 (11)
2020 (10)
2007 (10)
2008 (7)
2018 (6)
2017 (4)
2004 (1)
2003 (1)

UNIPROT ID/AC

A0A024RC46 (16)
A5A3E0 (16)
A6NNZ2 (16)
B3KML9 (16)
B4DHB3 (16)
B4DL86 (16)
B4DRV9 (16)
B4DY08 (16)
B4E3A4 (16)
C9JM50 (16)
E7EX29 (16)
G8JLB6 (16)
H0YM50 (16)
H7BZ94 (16)
I3L4N8 (16)
J3KPS3 (16)
J3QRK5 (16)
M0QZ52 (16)
O00299 (16)
O14556 (16)
O14818 (16)
O60812 (16)
O75369 (16)
O75369-8 (16)
O75694 (16)
O76013 (16)
O76015 (16)
O95678 (16)
P00338 (16)
P00338-3 (16)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (11)
CHEBI:16750 (9)
CHEBI:16919 (9)
CHEBI:17154 (9)
CHEBI:15354 (8)
CHEBI:16704 (8)
CHEBI:16708 (8)
CHEBI:17568 (8)
CHEBI:15741 (7)
CHEBI:16040 (7)
CHEBI:16235 (7)
CHEBI:16811 (7)
CHEBI:16870 (7)
CHEBI:17172 (7)
CHEBI:17596 (7)
CHEBI:17724 (7)
CHEBI:17748 (7)
CHEBI:17750 (7)
CHEBI:17821 (7)
CHEBI:18132 (7)
CHEBI:28865 (7)
CHEBI:116314 (6)
CHEBI:15355 (6)
CHEBI:15428 (6)
CHEBI:15611 (6)
CHEBI:15891 (6)
CHEBI:16335 (6)
CHEBI:16359 (6)
CHEBI:16393 (6)
CHEBI:16449 (6)

Metabolite Name

Hypoxanthine (5)
Uracil (5)
Uridine (5)
Xanthine (5)
Xanthosine (5)
4-Hydroxybenzaldehyde (4)
Adenine (4)
Adenosine (4)
Betaine (4)
Cholic acid (4)
Choline (4)
Creatine (4)
D-Ribose (4)
Guanine (4)
Guanosine (4)
Methionine (4)
N-Acetyl-L-Glutamine (4)
Thymidine (4)
1,5-Anhydro-D-glucitol (3)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (3)
2,6-Di-tert-butyl-4-hydroxymethylphenol (3)
3-Hydroxyoctadecanoic Acid (3)
3-O-p-Coumaroylquinic acid (3)
ATP (3)
Acetylcholine (3)
Alanine (3)
Azelaic acid (3)
Citrate (3)
Creatinine (3)
Cytidine (3)

Modification

6-dioxaoctanediamine derivatized cysteine (1)
Not available (1)

Study type

Transcription profiling by array (115)
ChIP-seq (59)
RNA-seq of coding RNA (31)
Comparative genomic hybridization by array (16)
Methylation profiling by array (11)
RNA-seq of non coding RNA (9)
Unknown experiment type (8)
RNA-seq of coding RNA from single cells (4)
ChIP-chip by tiling array (3)
ChIP-chip by array (2)
Genotyping by array (2)
Other (2)
MicroRNA profiling by array (2)
High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (141)
2023 (134)
2025 (130)
2024 (129)
2021 (122)
2020 (117)
2018 (98)
2019 (77)
2010 (64)
2012 (62)
2016 (56)
2017 (55)
2015 (55)
2014 (49)
2011 (46)
2013 (45)
2005 (27)
2026 (25)
2009 (21)
2008 (17)
2007 (14)
2006 (14)
2004 (1)
2003 (1)
2002 (1)
1998 (1)

Lab affiliation

Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
Assistant Professor, Biochemistry Boston University School of Medicine Investigator, National Emerging Infectious Diseases Laboratories (NEIDL), USA (1)
Beijing, You An Men Wai Xi Tou Tiao No.10 Capital Medical University, Beijing Laboratory of Oral Health (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Biochemistry&Molecular Biology, SUNY Upstate Medical University, Syracuse, NY, USA (1)
Department of Biological Chemistry, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Department of Pathogen Biology and Department of Genetics, School of Basic Medical Sciences, Tianjin Medical University, Tianjin 300070, China (1)
Department of Pathogen Biology and Department of Genetics, School of Basic Medical Sciences, Tianjin Medical University, Tianjin 300070, China. School of Pharmaceutical Science and Technology, Health Science Platform, Tianjin University, Tianjin, 300072, China (1)
Department of Pharmacy, The Affiliated Hospital of Southwest Medical University, China (1)
Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. (1)
Divisions of Pulmonary Biology, Molecular Cardiovascular Biology and Developmental Biology Department of Pediatrics Cincinnati Children's Hospital Medical Center Cincinnati, OH 45229 (1)
Gregor Mendel Institute of Molecular Plant Biology GmbH Dr. Bohr-Gasse 3, 1030 Vienna, Austria Phone: +43 1 79044 9850 http://www.gmi.oeaw.ac.at (1)
Institute for Cell Engineering, Department of Neurology, Johns Hopkins University School of Medicine (1)
Institute for Experimental Immunology and Imaging, University Hospital Essen, Essen, Germany (1)
Institute of Biophysics, Chinese Academy of Sciences (1)
Institute of Molecular Systems Biology, ETH Zurich (1)
Institute of hydrobiology, CAS (1)
Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai, China. (1)
Lung and Vascular Inflammation Section Laboratory of Allergic Diseases, NIAID, NIH USA (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 (1)
Nanjing University (1)
New England Biolabs, Inc, 240 County Rd, Ipswich, MA, 01938, USA. (1)
Professor Na He, School of Public Health, and Key Laboratory of Public Health Safety of Ministry of Education, Fudan University, Shanghai, China (1)
QBI Director and Professor in Cellular and Molecular Pharmacology, UCSF (1)
School of Public Health, and Key Laboratory of Public Health Safety of Ministry of Education, Fudan University, Shanghai, China (1)

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High salt primes a specific activation state of macrophages, M(Na)

Purpose: Investigate effects of high salt on human macrophage activation Methods: Human monocytes-derived macrophages were treated by additional 51mM NaCl for 24 hours (NaCl groups) or not (Control groups). mRNA profiles were generated by RNA-Seq, in triplicate, using Ion proton（Life tech). qRT–PCR ...

ORGANISM(S): Homo sapiens

2015-09-23 | E-GEOD-68482 | biostudies-arrayexpress

Transport of influenza A virus neuraminidase to host cell surface and virus replication are regulated by ARHGAP21 and Cdc42

Influenza virus neuraminidase (NA), a type II transmembrane glycoprotein, is transported to the virus assembly site at the plasma membrane and is a major viral envelope component that plays a critical role in the release of progeny virions and in determination of host range restriction. Although sig...

ORGANISM(S): Homo sapiens

2012-04-03 | E-GEOD-32878 | biostudies-arrayexpress

Global gene profiling comparison between hydrogen sulfide- and N-methyl-D-aspartate-induced neuronal deaths

Hydrogen sulfide (H2S), present in abundance in the mammalian brain, has recently been demonstrated to induce a dose- and time-dependent apoptotic-necrotic continuum in murine primary cortical neurons, which was successfully attenuated upon application of N-methyl-D-aspartate (NMDA) receptor antagon...

ORGANISM(S): Mus musculus

2013-01-23 | E-GEOD-16035 | biostudies-arrayexpress

Expression profiling of host genes altered after chemical-induced recurrent Epstein-Barr virus reactivation in nasopharyngeal carcinoma cells

Seroepidemiological studies imply a correlation between Epstein-Barr virus (EBV) reactivation and the development of nasopharyngeal carcinoma (NPC). Phorbol esters, butyrates and N-nitroso compounds are known chemical carcinogens in foodstuffs and cigarettes that have been implicated as risk factors...

ORGANISM(S): Homo sapiens

2012-08-14 | E-GEOD-38453 | biostudies-arrayexpress

Metabolomic Responses of Arabidopsis Suspension Cells to Bicarbonate under Light and Dark Conditions

Global CO2 level presently recorded at 400 ppm is expected to reach 550 ppm in 2050, an increment likely to impact plant growth and productivity. Using targeted LC-MS and GC-MS platforms we quantified 229 and 29 metabolites, respectively in a time-course study to reveal short-term responses to diffe...

2017-04-25 | MTBLS311 | MetaboLights

Isoenzyme N-Acyl-l-Amino Acid Amidohydrolase NA Increases Ochratoxin A Degradation Efficacy of Stenotrophomonas sp. CW117 by Enhancing Amidohydrolase ADH3 Stability.

Not available

S-EPMC9430628 | biostudies-literature

Bis[μ-N-(tert-butyl-dimethyl-sil-yl)quinolin-8-aminato-1:2κ(2) N (1),N (8):N (8)](N,N,N',N'-tetra-methyl-ethane-1,2-diamine-1κ(2) N,N')lithiumsodium.

Not available

S-EPMC3588735 | biostudies-literature

Mutant N143P reveals how Na+ activates thrombin.

Not available

S-EPMC2794733 | biostudies-literature

Rigidification of the autolysis loop enhances Na(+) binding to thrombin.

Not available