Chen W W - OmicsDI

Show results for

Unknown (71958)
Transcriptomics (2139)
Proteomics (1294)
Genomics (415)
Metabolomics (187)
Multiomics (9)
Models (4)
Other (4)
Genomic (3)

Organisms

Homo sapiens (1342)
Mus musculus (741)
Rattus norvegicus (131)
Arabidopsis thaliana (118)
Drosophila melanogaster (68)
Caenorhabditis elegans (50)
Saccharomyces cerevisiae (29)
Danio rerio (27)
Oryza sativa (26)
Sus scrofa (22)
Zea mays (21)
Glycine max (16)
Oryza sativa Japonica Group (14)
Macaca mulatta (12)
Gallus gallus (12)
Candida albicans (11)
Apostichopus japonicus (9)
Schizosaccharomyces pombe (8)
Drosophila simulans (7)
Oryza sativa Indica Group (7)
Bombyx mori (7)
Drosophila yakuba (6)
Gossypium hirsutum (6)
Bos taurus (6)
Apis mellifera (5)
Ovis aries (5)
Populus simonii (4)
Mayetiola destructor (4)
Aggregatibacter actinomycetemcomitans (4)
Drosophila pseudoobscura (4)

Organisms

Mus musculus (2)
Streptomyces avermitilis (1)
Arabidopsis thaliana (1)
Rattus norvegicus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (2422)
pride (735)
iProX (456)
MetaboLights (170)
EGA (125)
MassIVE (84)
NODE (9)
GNPS (8)
ENA (8)
PanoramaPublic (7)
PeptideAtlas (5)
BioModels (4)
GPMDB (4)
dbGaP (3)
geo (3)
jPOST (3)
PAXDB (2)

Tissue

Cell culture (178)
Epithelial cell (53)
Brain (39)
Leaf (36)
Liver (29)
Permanent cell line cell (26)
Plant cell (24)
Blood serum (22)
Heart (20)
Whole body (20)
Testis (19)
Lung (18)
Kidney (16)
Root (15)
Blood cell (14)
Blood plasma (14)
Stem cell (13)
Fibroblast (12)
Blood (11)
B cell (10)
Cell suspension culture (10)
Colon (10)
Hepatocyte (10)
Early embryonic cell (9)
Mixture (5)
Leaf (4)
Root (4)
Solvent (4)
Others (3)
Male Reproductive System (2)

Disease

Disease free (34)
Breast cancer (17)
Colon cancer (16)
Acute leukemia (9)
Not Available (4)
Alzheimer's disease (3)
Astrocytoma (1)
Congestive heart failure (1)
HPV positive (1)
Endometrioid carcinoma (1)
Ischemic (1)
Hepatocellular carcinoma-non tumorous region (1)
Liver cancer (1)
Colorectal polyp (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Diffuse large B-cell lymphoma (1)
Infiltrating ductal carcinoma (1)
Dukes D primary colon cancer (1)
Pancreatic tumor (1)
Colon cancer metastasis (1)
None- acute control (1)
Polycythemia vera (1)
Leukemia (1)
Small cell lung carcinoma (1)
Midgut carcinoid liver metastasis (1)
Megakaryoblastic leukemia (1)
Benign adenoma (1)
None- Acute Control (1)
Prostate cancer (1)
Normal (1)

Technology Type

Mass Spectrometry (735)
Shotgun proteomics (415)
Mass spectrometry (147)
Bottom-up proteomics (85)
Gel-based experiment (63)
Affinity purification coupled with mass spectrometry proteomics (59)
Data-dependent acquisition (47)
Top-down proteomics (33)
Data-independent acquisition (28)
Chemical cross-linking coupled with mass spectrometry proteomics (26)
SWATH MS (24)
Mass spectrometry assay (18)
Illumina HiSeq 2000 (6)
NMR spectroscopy (6)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 450K (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 2000, unknown (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Life Tech - Solid (1)

Instrument Platform

Illumina HiSeq 2000 (53)
Illumina NovaSeq 6000 (49)
Illumina HiSeq 2500 (40)
Illumina HiSeq 4000 (20)
NextSeq 500 (12)
BGISEQ-500 (11)
NextSeq 550 (7)
Illumina Genome Analyzer IIx (4)
HiSeq X Ten (4)
Illumina Genome Analyzer II (3)
Illumina NovaSeq X (3)
Illumina HiSeq 1000 (3)
Illumina MiSeq (3)
High resolution C. scanner (2)
Illumina Genome Analyzer (2)
NextSeq 2000 (2)
Illumina HiSeq 2000 platform (1)
Agilent Bioanalyzer 2100 (or TapeStation); Qubit 4 Fluorometer (Thermo Fisher Scientific) (1)
NanoDrop ND-1000 spectrophotometer (1)
N/C (1)
BD FACSAria™ III (1)
Maxwell® AS2000 instrument (1)
BGIseq500 (1)
BD FACSMelody (1)
Dell T8310 (1)
FACS (1)
Agilent 2100 bioanalyzer (1)
NanoDrop ND-1000 (1)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)

Publication Date

2014 (397)
2013 (359)
2015 (293)
2012 (288)
2010 (259)
2011 (244)
2016 (208)
2025 (198)
2022 (197)
2023 (191)
2021 (176)
2024 (155)
2020 (121)
2019 (102)
2017 (86)
2026 (85)
2018 (84)
2009 (75)
2008 (65)
2005 (54)
2007 (48)
2006 (22)
2004 (4)
2003 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
Q02297 (1)
P21860 (1)
P04626 (1)
P42338 (1)
O00459 (1)
Q13115 (1)
P42336 (1)
P28562 (1)
Q15303 (1)
A4QPA9 (1)
P01133 (1)
P00533 (1)
P27986 (1)
O15530 (1)
P31749 (1)
Q16828 (1)
P04049 (1)
Q02750 (1)
P28482 (1)
Q07889 (1)
P98077 (1)
P20936 (1)
Q06124 (1)
P62993 (1)

ENSEMBL ID

ENSG00000170477 (5)
ENSG00000247315 (5)
ENSG00000147251 (4)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:30769 (56)
CHEBI:17368 (50)
CHEBI:16704 (49)
CHEBI:16335 (48)
CHEBI:17154 (47)
CHEBI:17568 (47)
CHEBI:17895 (47)
CHEBI:17596 (47)
CHEBI:15741 (46)
CHEBI:16750 (45)
CHEBI:17295 (45)
CHEBI:16708 (43)
CHEBI:15891 (43)
CHEBI:15756 (43)
CHEBI:7916 (42)
CHEBI:16919 (41)
CHEBI:16828 (41)
CHEBI:17562 (40)
CHEBI:15354 (40)
CHEBI:16411 (39)
CHEBI:16737 (39)
CHEBI:17821 (37)
CHEBI:18050 (37)
CHEBI:18012 (37)
CHEBI:27897 (37)
CHEBI:6650 (35)
CHEBI:16196 (35)
CHEBI:49603 (1)
CHEBI:16618 (1)
CHEBI:15422 (1)

Metabolite Name

Hypoxanthine (36)
Uracil (34)
Adenosine (31)
Uridine (31)
Creatine (31)
L-Phenylalanine (31)
Inosine (31)
Cytidine (30)
L-Tyrosine (30)
L-Tryptophan (29)
Adenine (29)
Xanthine (29)
Guanosine (29)
Citric acid (28)
Creatinine (28)
Thymine (27)
L-Arginine (27)
Taurine (27)
Succinic acid (25)
L-Glutamine (25)
Choline (24)
L-Histidine (23)
Cytosine (23)
Riboflavin (23)
Uric acid (23)
Thymidine (23)
Betaine (22)
L-Proline (22)
Pantothenic acid (22)
Palmitic acid (22)

First Public Date

2014 (3)
2025 (2)
2026 (1)
2021 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (2)
Other (1)
Constraint-based model (1)

Lab affiliation

Northwest University (5)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (4)
Department of Chemistry, Michigan State University (4)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (4)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (4)
Peking University (4)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (3)
Genomics Research Center, Academia Sinica, Taipei, 11529 Taiwan (3)
Shandong Normal University (3)
Shanghaitech University (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Beijing Friendship Hospital, Capital Medical University (2)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (2)
College of Horticulture, Hunan Agricultural University (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (2)
Department of Biochemistry and Department of Metabolic Medicine of the Fourth Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China (2)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Life Science, National Taiwan University (2)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (2)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Submitter Keywords

Machine Learning Model (1)
Immuno-oncology (1)

Modification

15.994915 (5)
57.021464 (5)
71.037114 (3)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (1308)
RNA-seq of coding RNA (432)
ChIP-seq (208)
RNA-seq of non coding RNA (80)
Comparative genomic hybridization by array (72)
Methylation profiling by high throughput sequencing (63)
Methylation profiling by array (50)
Unknown experiment type (27)
Other (26)
ChIP-chip by tiling array (21)
Genotyping by array (15)
Transcription profiling by RT-PCR (14)
RNA-seq of coding RNA from single cells (14)
DNA-seq (11)
RNA-seq of total RNA (11)
MicroRNA profiling by array (10)
Transcription profiling by tiling array (8)
ATAC-seq (6)
Transcription profiling by SAGE (5)
Plant - High-throughput sequencing (5)
Cell line - High-throughput sequencing (5)
High-throughput sequencing (4)
ChIP-chip by array (4)
Human - Single-cell sequencing (2)
Animal - High-throughput sequencing (2)
RNAi profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by high throughput sequencing (1)
Cell line - Single-cell sequencing (1)
Baseline (1)

Release Date

2025 (11149)
2022 (10011)
2023 (8968)
2024 (8794)
2021 (7505)
2020 (5431)
2019 (3967)
2018 (3310)
2017 (2853)
2016 (2500)
2015 (2139)
2014 (1744)
2026 (1525)
2013 (1203)
2012 (958)
2011 (727)
2010 (570)
2009 (328)
2008 (227)
2007 (145)
2006 (111)
2005 (103)
2004 (39)
2003 (20)
2002 (18)
2001 (12)
2000 (9)
1998 (6)
1999 (4)
1997 (1)

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Effects of global system for mobile communications 1800 MHz radiofrequency electromagnetic fields on gene expression in MCF-7 cells

Despite many studies over a decade, it still remains ambiguous as to the real biological effects induced by radiofrequency electromagnetic fields (RF EMF). Epidemiological studies indicates that long-term exposure to EMF could increase the risk of breast cancer. Some reports have showed that in vitr...

ORGANISM(S): Homo sapiens

2010-07-20 | E-GEOD-22991 | biostudies-arrayexpress

Mast cell-deficient W-sash c-kit mutant Kit W-sh/W-sh mice as a model for investigating mast cell biology in vivo.

Not available

S-EPMC1698741 | biostudies-literature

Expression data from silkworm posterior silk glands at the late larval stages

The silkworm silk gland is one of the most efficient protein synthesis systems among all organisms. Its amazingly efficient protein synthesis makes the silk gland a desirable object for basic studies on gene expression and regulation and for biotechnological applications. At the early stages of the ...

ORGANISM(S): Bombyx mori

2012-12-05 | E-GEOD-26172 | biostudies-arrayexpress

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Identification of avian W-linked contigs by short-read sequencing.

Not available

S-EPMC3428670 | biostudies-literature

The complete chloroplast genome of Primula tsiangii W. W. Smith (Primulaceae): a karst endemic primrose in Southwest China.

Not available

S-EPMC7706616 | biostudies-literature

Histone-fold centromere protein W (CENP-W) is associated with the biological behavior of hepatocellular carcinoma cells.

Not available

S-EPMC8291794 | biostudies-literature

Assembly of the poorly differentiated Verasper variegatus W chromosome by different sequencing technologies.