Chen Ye Y - OmicsDI

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Unknown (6702)
Proteomics (172)
Transcriptomics (35)
Metabolomics (19)
Genomics (16)

Organisms

Acidithiobacillus ferrooxidans ATCC 53993 (85)
Homo sapiens (73)
Mus musculus (28)
Schizosaccharomyces pombe (5)
Drosophila melanogaster (4)
Ovis aries (2)
Bombyx mori (2)
Rattus norvegicus (2)
Arabidopsis thaliana (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Vibrio parahaemolyticus RIMD 2210633 (2)
Macaca mulatta (1)
Oryza sativa Indica Group (1)
Streptococcus suis (1)
Oryza sativa Japonica Group (1)
Pseudomonas aeruginosa (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Escherichia coli (1)
Macaca fascicularis fascicularis (1)
Medicago truncatula (1)
Oryctolagus cuniculus (1)
Pseudomonas aeruginosa PA14 (1)
Salmonella sp. WT (1)
Spinacia oleracea (1)
Triticum aestivum (1)
Triticum aestivum subsp. tibeticum (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Zea mays (1)

Repository

pride (85)
iProX (80)
biostudies-arrayexpress (42)
MetaboLights (19)
EGA (9)
MassIVE (3)
PeptideAtlas (3)
PAXDB (1)

Tissue

Cell culture (19)
Brain (5)
Epithelial cell (5)
Leaf (5)
Whole body (5)
Heart (4)
Blood plasma (3)
Kidney (3)
Liver (3)
Permanent cell line cell (3)
Others (2)
B cell (2)
Hepatocyte (2)
Lung (2)
Macrophage (2)
Primary cell (2)
Brain (1)
Blood serum (1)
Bone marrow (1)
Cell suspension culture (1)
Colon (1)
Embryo (1)
Embryonic stem cell (1)
Epididymal white adipose tissue (1)
Erythrocyte (1)
Gastric mucosa (1)
HeLa cell (1)
HuH-7 cell (1)
Multiple myeloma cell line (1)
Nasopharyngeal carcinoma cell (1)

Disease

Breast cancer (3)
Cervix carcinoma (3)
Acute leukemia (2)
Disease free (2)
Acute kidney failure (1)
Bacterial infectious disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Colon cancer (1)
Gastric adenocarcinoma (1)
Gastric ulcer (1)
Neuroblastoma (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (85)
Shotgun proteomics (40)
Mass spectrometry (17)
Bottom-up proteomics (10)
Data-dependent acquisition (9)
Affinity purification coupled with mass spectrometry proteomics (7)
Gel-based experiment (5)
SWATH MS (5)
Top-down proteomics (5)
Data-independent acquisition (3)
SRM/MRM (3)
NMR spectroscopy (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
MSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (8)
Gas Chromatography MS - (4)
Q Exactive (3)
Illumina HiSeq 2000 (2)
LTQ Orbitrap XL (2)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 2500 (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Xevo G2 QTOF (Waters) (1)
Bruker (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
LTQ Orbitrap (1)

Publication Date

2022 (35)
2025 (29)
2024 (23)
2021 (23)
2023 (22)
2026 (18)
2020 (15)
2019 (11)
2010 (10)
2014 (8)
2016 (6)
2012 (6)
2018 (6)
2017 (6)
2004 (4)
2015 (3)
2013 (3)
2011 (2)
2009 (1)
2007 (1)
2003 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:17596 (6)
CHEBI:16811 (5)
CHEBI:16704 (5)
CHEBI:15891 (5)
CHEBI:6650 (5)
CHEBI:18237 (5)
CHEBI:17368 (5)
CHEBI:30769 (5)
CHEBI:22660 (4)
CHEBI:18186 (4)
CHEBI:24898 (4)
CHEBI:16610 (4)
CHEBI:27266 (4)
CHEBI:55328 (4)
CHEBI:17306 (4)
CHEBI:16995 (4)
CHEBI:18132 (4)
CHEBI:15843 (4)
CHEBI:32816 (4)
CHEBI:7916 (4)
CHEBI:16467 (4)
CHEBI:78320 (4)
CHEBI:16750 (4)
CHEBI:16450 (4)
CHEBI:16449 (4)
CHEBI:30915 (4)
CHEBI:16919 (4)
CHEBI:17895 (4)
CHEBI:17295 (4)

Metabolite Name

Hypoxanthine (6)
Choline (5)
Taurine (5)
Arachidonic acid (5)
Valine (4)
Methionine (4)
Docosahexaenoic acid (4)
Uridine (4)
Creatine (4)
Inosine (4)
Glutamate (3)
Leucine (3)
Uracil (3)
Betaine (3)
Glycochenodeoxycholic acid (3)
L-Ornithine (3)
Eicosapentaenoic acid (3)
Phosphocholine (3)
Taurocholic acid (3)
Pantothenic acid (3)
L-Arginine (3)
Citric acid (3)
Sebacic acid (3)
Adenosine (3)
Spermidine (3)
Alanine (3)
Salicylic acid (3)
Proline (3)
Palmitic acid (3)
Isoleucine (3)

Study type

Transcription profiling by array (17)
RNA-seq of coding RNA (9)
ChIP-seq (3)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Other (1)
DNA-seq (1)

Release Date

2025 (1147)
2022 (931)
2024 (880)
2023 (879)
2021 (770)
2020 (542)
2019 (299)
2018 (271)
2017 (214)
2016 (192)
2026 (153)
2015 (133)
2014 (111)
2013 (58)
2012 (56)
2011 (33)
2010 (32)
2009 (13)
2008 (8)
2007 (7)
2004 (5)
2006 (4)
2005 (3)
2003 (2)
2000 (1)

Lab affiliation

Zhejiang University (4)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (2)
Jinan University (2)
School of Pharmacy, UW-Madison (2)
Shenzhen Hospital of Southern Medical University (2)
University of Science and Technology of China (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Capital Normal University (1)
Chengdu university of traditional chinese medicine (1)
Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC) (1)
College of Animal Science and Technology, China Agricultural University.College of Animal Science and Technology, China Agricultural University. (1)
College of Pharmacy, Jinan University, Guangzhou 510632, P. R. China (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)
Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University, Fenghua Road No.818, Ningbo, 315211, China. (1)
Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK (1)
Department of Cardiovascular Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China (1)
Department of Chemistry and School of Pharmacy, University of Wisconsin-Madison, WI, USA (1)
Department of Dermatology, Xinhua Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China (1)
Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China; Cancer Center of Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of Neurology, Fujian Medical University Union Hospital (1)

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First proteomic analysis of lysine acetylation on extensive functions in Solenopsis invicta Buren

Lysine acetylation (Kac) plays a critical role in the regulation of a great deal of important cellular processes. However, little is known about Kac in Solenopsis invicta, which is one of the 100 most dangerous invasive species in the world. Lysine acetylome in S. invicta was evaluated for the first...

ORGANISM(S): Solenopsis invicta

2020-12-02 | PXD019033 | Pride

Suppression of colorectal tumorigenesis by recombinant Bacteroides fragilis enterotoxin-2 in vivo.

Not available

S-EPMC5292333 | biostudies-literature

Effect of high-voltage electrostatic field salting on the quality of salt-reduced Yi ye Cheng golden pomfret.

Not available

S-EPMC11851181 | biostudies-literature

Safety and Cost Evaluation of Modified Medium-Length Catheters in Patients With Advanced Cancer: A Randomized Controlled Trial.

Not available

S-EPMC12919650 | biostudies-literature

Balanced sparse model for tight frames in compressed sensing magnetic resonance imaging.

Not available

S-EPMC4388626 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7986 | MetaboLights

Structural basis of neuropeptide Y signaling through Y₁ and Y₂ receptors.

Not available

S-EPMC11179954 | biostudies-literature

Treatment of diabetic ulcers with Chuang Ling Ye: systems pharmacology and functional validation reveal the mechanism of angiogenesis and inflammation abatement driven by the PI3K-AKT signaling pathway.

Not available

S-EPMC12597994 | biostudies-literature

The expression of CCL17 and potential prognostic value on tumor immunity in thyroid carcinoma based on bioinformatics analysis.

Not available

S-EPMC11686015 | biostudies-literature

ena-DATASET-DTU-20-02-2017-20:47:48:841-649 - samples

Variants on the Y chromosome for 62 danish males in VCF format from the GenomeDenmark Phase 2 cohort. Variants were called using reference based approaches such as the haplotype-caller module from GATK and using alignment of denovo assemblies to the reference using ASMvar.

EGAD00001003186 | EGA

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6944 Results

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Organisms

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Tissue

Disease

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Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

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Lab affiliation

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