Choudhary E E - OmicsDI

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Unknown (443)
Proteomics (66)
Transcriptomics (14)
Genomics (3)
Metabolomics (3)

Organisms

Homo sapiens (38)
Mus musculus (21)
Escherichia coli (7)
Plasmodium berghei (3)
Bos taurus (2)
Campylobacter jejuni (2)
Citrobacter rodentium (2)
Drosophila melanogaster (2)
Mycobacterium tuberculosis (2)
Mycobacterium tuberculosis H37Rv (2)
Saccharomyces cerevisiae (2)
marine plankton environmental sample (2)
Salmonella enterica (1)
Citrobacter rodentium ICC168 (1)
Escherichia coli KO11FL (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)

Organisms

Citrobacter rodentium (1)
Campylobacter jejuni (1)

Repository

pride (61)
biostudies-arrayexpress (15)
MassIVE (3)
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geo (2)
ENA (2)

Tissue

Cell culture (12)
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Malignant neoplasm of ovary (2)
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Technology Type

Mass Spectrometry (61)
Shotgun proteomics (32)
Bottom-up proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (13)
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SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
NextSeq 2000 (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Q Exactive (1)
Liquid Chromatography MS - negative - reverse phase (1)
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Publication Date

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2026 (10)
2020 (8)
2018 (8)
2023 (7)
2019 (6)
2017 (5)
2015 (4)
2014 (4)
2022 (4)
2011 (3)
2016 (2)
2012 (2)
2024 (2)
2021 (2)
2013 (1)
2010 (1)
2009 (1)

CHEBI ID

CHEBI:16020 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:16750 (2)
CHEBI:17562 (2)
CHEBI:17596 (2)
CHEBI:17802 (2)
CHEBI:178090 (2)
CHEBI:178091 (2)
CHEBI:178092 (2)
CHEBI:19062 (2)
CHEBI:19065 (2)
CHEBI:19068 (2)
CHEBI:19227 (2)
CHEBI:19228 (2)
CHEBI:19229 (2)
CHEBI:19688 (2)
CHEBI:19702 (2)
CHEBI:20129 (2)
CHEBI:20607 (2)
CHEBI:20794 (2)
CHEBI:21891 (2)
CHEBI:45996 (2)
CHEBI:68467 (2)
CHEBI:69426 (2)
CHEBI:89487 (2)
CHEBI:15344 (1)
CHEBI:15428 (1)
CHEBI:15741 (1)
CHEBI:15940 (1)

Metabolite Name

1-methyladenosine (2)
1-methylguanosine (2)
1-methylinosine (2)
1-methylpseudouridine (2)
2'-O-methyladenosine (2)
2'-O-methylcytidine (2)
2'-O-methylguanosine (2)
2'-O-methylinosine (2)
2'-O-methyluridine (2)
2-methyladenosine (2)
2-methylguanosine (2)
3-methylcytidine (2)
3-methylpseudouridine (2)
3-methyluridine (2)
4-methylcytidine (2)
5-methylcytidine (2)
5-methyluridine (2)
6-methyladenosine (2)
7-methylguanosine (2)
8-methyladenosine (2)
Adenosine (2)
Cytidine (2)
Guanosine (2)
Inosine (2)
Pseudouridine (2)
Uridine (2)

First Public Date

2013 (2)

Classification

bacteria (2)

Study type

Transcription profiling by array (7)
Proteomic profiling by mass spectrometer (2)
RNA-seq of coding RNA (2)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (63)
2023 (46)
2022 (46)
2021 (45)
2020 (41)
2024 (38)
2019 (34)
2018 (33)
2017 (30)
2016 (19)
2015 (17)
2014 (15)
2013 (8)
2026 (7)
2010 (6)
2012 (4)
2011 (3)
2009 (2)
2004 (1)

Lab affiliation

Functional Proteomics, ICR (10)
Wellcome Trust Sanger Institute (9)
The Institute of Cancer Research (7)
The Institute of Cancer Research, London (4)
Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada (2)
ICR, Functional Proteomics (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
Wellcome Trust Sanger Institute & The Institute of Cancer Research (2)
Aix Marseille Univ, CNRS, INSERM, Institut Paoli-Calmettes, CRCM, Marseille, France (1)
Associate Professor Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone,Gurugram-Faridabad Expressway Faridabad-121001 (1)
CNIC (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (1)
Cellular and Molecular Pharmacology, UCSF, San Francisco, CA (1)
Cornell University (1)
Departamento de Bioquímica y Biología Molecular B e Inmunología. Facultad de Química. Universidad de Murcia. Campus de Excelencia Mare Nostrum (1)
Department of Biomedical Science Centre for Membrane Interactions and Dynamics (CMIAD) Firth Court, Western Bank The University of Sheffield Sheffield S10 2TN United Kingdom (1)
Department of Fundamental Neurosciences, Université de Lausanne, 1005 Lausanne, Switzerland & Department of Biomedicine and Prevention, Università degli studi di Roma "Tor Vergata", 00133 Rome, Italy (1)
Developmental and Cell Biology University of California, Irvine Irvine, California, USA (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Institute of Cancer Research, London (1)
Institute of Cancer Research, London & Wellcome Trust Sanger Institute, Cambridge (1)
Leader of the Molecular and Systems Oncology Team in the Division of Molecular Pathology at The Institute of Cancer Research, London, UK (1)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark (1)
Proteomic Mass Spectrometry Wellcome Trust Sanger Institute United Kingdom (1)
Spanishg National Center for Cardiovascular Research (CNIC), Madrid, Spain. (1)
The NNF Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Gurugram-Faridabad Expressway Faridabad-121001 (1)
Translational Helath Science and Technology Institute, NCR Biotech Science Cluster, Faridabad , Haryana, India ( lab head ) (1)
University of Copenhagen Novo Nordisk Foundation Center for Protein Research Blegdamsvej 3B, 6.1 DK-2200 Copenhagen N Denmark (1)

Tags

pathogen:bacterium (2)
pathogen (2)
xref:PubMed:21816880 (1)
xref:PubMed:21490962 (1)

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Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome

We applied SD-SILAC to determine absolute acetylation stoichiometry in exponentially-growing and stationary-phase wild type and sirtuin deacetylase CobB-deficient E. coli. We further assayed stoichiometry in phophotransacetylase (pta) and acetate kinase (ackA) mutant strains in the presence and abse...

ORGANISM(S): Escherichia coli

2017-03-07 | PXD005757 | Pride

Guillain-Barre syndrome in a patient of acute Hepatitis E virus infection associated with genotype 1: Case report and literature review.

Not available

S-EPMC6409121 | biostudies-literature

Development and Validation of a Digital (Peek) Near Visual Acuity Test for Clinical Practice, Community-Based Survey, and Research.

Not available

S-EPMC9807182 | biostudies-literature

Cyclin E/Cdk2-dependent phosphorylation of Mcl-1 determines its stability and cellular sensitivity to BH3 mimetics.

Not available

S-EPMC4627281 | biostudies-literature

Use of AMSR-E microwave satellite data for land surface characteristics and snow cover variation.

Not available

S-EPMC5127930 | biostudies-literature

[E-MTAB-502] Citrobacter rodentium transcriptomics (Regulation)

Whole genome trancription study of Citrobacter rodentium grown in rich media. Publication Title: Citrobacter rodentium is an Unstable Pathogen Showing Evidence of Significant Genomic Flux Publication Author List: Nicola K. Petty, Theresa Feltwell, Derek Pickard, Simon Clare, Ana L. Toribio, Maria Fo...

ORGANISM(S): Citrobacter rodentium

2011-07-14 | GSE30610 | GEO

[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni

RNA-seq analysis of the transcriptome of wild type C.jejuni NCTC11168, and of an rpoN mutant of the same strain, both grown in vitro. ArrayExpress Release Date: 2011-06-14 Publication Title: Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni Publication Author List: Roy R. Ch...

ORGANISM(S): Campylobacter jejuni

2011-07-14 | GSE30621 | GEO

Crystal structure of 4-[(E)-(2-carbamo-thio-ylhydrazinyl-idene)meth-yl]benzoic acid.

Not available

S-EPMC4647436 | biostudies-literature

Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome.

Not available

S-EPMC5417819 | biostudies-literature

Nemopilema nomurai Jellyfish venom treatment leads to alterations in rat cardiomyocytes proteome.

Not available

S-EPMC4669470 | biostudies-literature

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