Cichlids - OmicsDI

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Unknown (329)
Genomics (134)
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Organisms

Oreochromis niloticus (6)
Maylandia zebra (5)
Pundamilia nyererei (4)
Astatotilapia calliptera (4)
Haplochromis burtoni (4)
Astatoreochromis alluaudi (2)
Tropheops sp. 'mauve' (2)
Ophthalmotilapia ventralis (2)
Danio rerio (1)
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Nyassachromis microcephalus (1)
Pungu maclareni (1)
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Hemichromis fasciatus (1)

Organisms

Haplochromis burtoni (7)
Maylandia zebra (3)
Mchenga conophoros (2)
African cichlids (2)
Astatotilapia calliptera (2)
Haplochromis (2)
Neolamprologus multifasciatus (2)
Haplochromini (2)
Oreochromis niloticus (2)
Haplochromis sp. (1)
Pundamilia nyererei (1)
Rhamphochromis esox (1)
Melanochromis auratus (1)
Labeotropheus fuelleborni (1)
Teleogramma (1)
Amphilophus citrinellus (1)
Cichlidae (1)
Poecilia reticulata (1)
gut metagenome (1)
freshwater metagenome (1)
Mus musculus (1)

Repository

ENA (130)
geo (13)
biostudies-arrayexpress (3)
MetaboLights (2)
pride (2)
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Tissue

Liver (1)
Testis (1)

Technology Type

Mass spectrometry (2)
Mass Spectrometry (2)
Bottom-up proteomics (1)
Shotgun proteomics (1)

Instrument Platform

Gas Chromatography MS - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2024 (5)
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2015 (2)
2022 (2)
2019 (2)
2013 (1)
2007 (1)
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CHEBI ID

CHEBI:16118 (2)
CHEBI:23359 (2)
CHEBI:16521 (2)
CHEBI:86570 (2)
CHEBI:28623 (2)
CHEBI:30805 (2)
CHEBI:26984 (2)
CHEBI:16675 (2)
CHEBI:35584 (2)
CHEBI:27693 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:18257 (2)
CHEBI:16750 (2)
CHEBI:25017 (2)
CHEBI:30832 (2)
CHEBI:30911 (2)
CHEBI:28842 (2)
CHEBI:4167 (2)
CHEBI:15741 (2)
CHEBI:17268 (2)
CHEBI:6650 (2)
CHEBI:16196 (2)
CHEBI:16335 (2)
CHEBI:7916 (2)
CHEBI:17859 (2)
CHEBI:15891 (2)
CHEBI:18012 (2)
CHEBI:17596 (2)
CHEBI:15756 (2)

Metabolite Name

Leucine (2)
Sorbitol (2)
Quinolinic acid (2)
Colchicine (2)
Campesterol (2)
Purine (2)
Succinic acid (2)
Pantothenic acid (2)
Fumaric acid (2)
Taurine (2)
Citric acid (2)
Stearic acid (2)
Adenosine (2)
Palmitic acid (2)
Oleic acid (2)
Linoleic acid (2)
Dodecanoic acid (2)
Guanosine (2)
Inosine (2)
Cyanidin-3-(p-coumaroyl)-rutinoside-5-glucoside (1)
5-Methylhex-4-enoyl-CoA (1)
Delphinidin 3-O-beta-D-glucoside 5-O-(6-coumaroyl-beta-D-glucoside) (1)
Quercetin 3-O-beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside (1)
(6S)-6beta-Hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide phosphate (1)
Delphinidin 5-O-beta-D-glucoside 3-O-beta-D-sambubioside (1)
Pelargonidin 3-O-beta-D-glucoside 5-O-(6-coumaroyl-beta-D-glucoside) (1)
N(omega)-(ADP-D-ribosyl)-L-arginine (1)
Premithramycin A2' (1)
Coenzyme F420-1 (1)
Delphinidin 3-O-3'',6''-O-dimalonylglucoside (1)

First Public Date

2024 (15)
2026 (14)
2025 (13)
2020 (11)
2013 (11)
2022 (10)
2018 (10)
2023 (9)
2021 (9)
2019 (8)
2015 (8)
2017 (6)
2016 (5)
2014 (1)

Study type

ChIP-seq (1)
Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2019 (29)
2025 (26)
2022 (25)
2015 (22)
2018 (22)
2014 (20)
2013 (19)
2023 (19)
2020 (18)
2017 (18)
2024 (16)
2021 (16)
2016 (14)
2012 (11)
2010 (9)
2008 (9)
2011 (7)
2006 (7)
2007 (6)
2009 (5)
2005 (4)
2004 (3)
2026 (2)
2003 (2)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Department of Genetics, University of Cambridge (1)
IMB, Ackermannweg 4, 55128 Mainz (1)

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African cichlids

Molecular basis of lip hypertrophy in East African Cichlids

PRJDB17757 | ENA

African cichlids

African cichlids Raw sequence reads

PRJNA286304 | ENA

Amazonian cichlids

Retinal transcriptomes for Cichlids from the Amazon basin

PRJNA351925 | ENA

East African cichlids

Tropheini cichlids from Lake Tanganyika Raw sequence reads

PRJNA626002 | ENA

Pike cichlids Crenicichla

Phylogenomics of the pike cichlids (Cichlidae: Crenicichla): the rapid evolution and trophic diversification of an incipient species flock

PRJNA396208 | ENA

Sympatric speciation in Midas cichlids

Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids

PRJEB12689 | ENA

Neotropical cichlids (Cichlinae: Heroini)

Comparing ultraconserved elements and exons for phylogenomic analyses of Middle American cichlids: when data agree to disagree

PRJNA690533 | ENA

Temporal diversification of Central American cichlids.

Not available

S-EPMC2944184 | biostudies-literature

Haplochromine cichlids

Lake Victoria cichlid fishes and other members of the Lake Victoria Regions Superflock and close relatives. Genome sequencing

PRJNA926115 | ENA

Rapid speciation of cichlids fishes may be explained by evolutionary divergence of novel open reading frames

We have investigated whether we can understand the speciation of the cichlid fishes using proteogenomic approach. We have deposited both the RNA-Seq data and Mass Spectra data here. Details of methods carried out can be found in the Methods Section of the paper.

ORGANISM(S): Oreochromis niloticus Pundamilia nyererei

2021-09-09 | PXD019072 | Pride

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