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TranscriptomicsAltered Expression of Intraflagellar Transport Genes is Associated with Short Cilia in Smoking and COPD
Study Smoking and COPD are associated with decreased mucociliary clearance and healthy smokers have shorter cilia in the large airway than nonsmokers. Intraflagellar transport (IFT) is the process by which cilia are produced and maintained. We assessed expression of IFT-related genes in smokers and ...
ORGANISM(S): Homo sapiens 
2014-02-03 | E-GEOD-43939 | biostudies-arrayexpress
ProteomicsAPEX2 proximity proteomics of microtubule inner proteins FAP45 and FAP52
APEX2-based proximity proteomics data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'
ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691) 
2022-11-07 | MSV000090660 | MassIVE
ProteomicsTMT analysis of flagellum skeletons from MIP knockdown parasites
TMT data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'
ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691) 
2022-11-07 | MSV000090661 | MassIVE
ProteomicsAsian citrus psyllid Percoll gradient fraction proteome analysis Cilia lab
‘Candidatus Liberibacter asiaticus’ (CLas), the bacterial pathogen associated with citrus greening disease, is transmitted by Diaphorina citri, the Asian citrus psyllid (ACP). Percoll gradient density centrifugation was used to fractionate an ACP homogenate to generate a sample enriched for intact ...
ORGANISM(S): Diaphorina citri (Asian citrus psyllid) 
2018-10-25 | PXD003097 | Pride
Asian citrus psyllid Diaphorina citri Citrus greening Insect vector Candidatus liberibacter asiaticus Endosymbiont 
ProteomicsIncreased cysteine protease activity in the aphid midgut decreases the transmission efficiency of a circulative plant virus
Aphids, sap-sucking insects in the order Hemiptera, are among the most prolific insect vectors of plant viruses Plant viruses from the family Luteoviridae are transmitted exclusively by aphids in a circulative manner and cause significant crop yield losses. Circulative plant viruses must cross the a...
ORGANISM(S): Myzus persicae persicae 
2016-12-14 | PXD004893 | Pride
Host-pathogen interactions Lc-msms Luteoviridae Potato leafroll virus 2d-dige 
ProteomicsPLRV co-immunoprecipitation from Solanum tuberosum
Phloem localization of plant viruses is advantageous for acquisition by sap-sucking vectors but hampers host-virus protein interaction studies. In this study, Potato leafroll virus (PLRV)-host protein complexes were isolated from systemically infected potato, a natural host of the virus. Comparing t...
ORGANISM(S): Solanum tuberosum (Potato) 
2016-12-14 | PXD004814 | Pride
Host-pathogen interactions Lc-msms Co-immunoprecipitation Luteoviridae Polerovirus Solanum tuberosum Potato leafroll virus Phloem-limited 
ProteomicsEvaluation of a bead-free immunoprecipitation technique coupled with tandem mass spectrometry for identification of plant-virus protein interactions (DeBlasio_JBT_2017)
Potato leafroll virus (PLRV) is an aphid-borne, RNA virus in the Luteoviridae that causes significant loss to potato production worldwide. Precision methods to block virus infection in plants or the transmission of a virus by the insect represent new approaches to virus disease management and requir...
ORGANISM(S): Nicotiana benthamiana 
2018-10-24 | PXD006338 | Pride
Host-pathogen interactions Bead-free immunoprecipitation  plant-virus interactome  tandem mass spectrometry Luteoviridae Polerovirus Molecular virology Potato leafroll virus Phloem-limited 
ProteomicsAsian Citrus Psyllid proteomics: CLas(-) whole ACP nymph
‘Candidatus Liberibacter asiaticus’ (CLas), the bacterial pathogen associated with citrus greening disease, is transmitted by Diaphorina citri, the Asian citrus psyllid (ACP). This dataset was obtained from analysis of peptides from CLas(-) nymph ACP samples.
ORGANISM(S): Diaphorina citri (Asian citrus psyllid) 
2017-02-27 | PXD004225 | Pride
Asian citrus psyllid Citrus greening Insect vector Candidatus liberibacter asiaticus Huanglongbing 
ProteomicsAsian citrus psyllid proteomics: CLas(-) whole adult ACP
‘Candidatus Liberibacter asiaticus’ (CLas), the bacterial pathogen associated with citrus greening disease, is transmitted by Diaphorina citri, the Asian citrus psyllid (ACP). This dataset was obtained from analysis of CLas(-) whole adult ACP samples.
ORGANISM(S): Diaphorina citri (Asian citrus psyllid) 
2017-02-27 | PXD004454 | Pride
Asian citrus psyllid Citrus greening Diaphorina citri Insect vector Candidatus liberibacter asiaticus Huanglongbing 
ProteomicsAsian citrus psyllid proteomics: CLas(+) whole nymph ACP
‘Candidatus Liberibacter asiaticus’ (CLas), the bacterial pathogen associated with citrus greening disease, is transmitted by Diaphorina citri, the Asian citrus psyllid (ACP). This dataset was obtained from analysis of CLas(+) whole nymph ACP samples.
ORGANISM(S): Diaphorina citri (Asian citrus psyllid) 
2017-02-27 | PXD004229 | Pride
Asian citrus psyllid Citrus greening Insect vector Candidatus liberibacter asiaticus Huanglongbing 
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