Cilium - OmicsDI

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Unknown (1478)
Transcriptomics (344)
Genomics (246)
Proteomics (93)
Metabolomics (8)
Other (2)
Methylation profiling (1)

Organisms

Homo sapiens (163)
Mus musculus (105)
Drosophila melanogaster (58)
Arabidopsis thaliana (19)
Xenopus laevis (8)
Caenorhabditis elegans (7)
Danio rerio (7)
Synechocystis sp. PCC 6803 (5)
Escherichia coli (5)
Bos taurus (5)
Gossypium hirsutum (4)
Tetrahymena thermophila (3)
Helicobacter pylori (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Salmonella enterica (2)
Schmidtea mediterranea (2)
Legionella pneumophila (2)
Nicotiana tabacum (2)
Solanum lycopersicum (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Rattus norvegicus (2)
Nostoc sp. PCC 7120 = FACHB-418 (1)
Bacillus subtilis subsp. natto (1)
Agrobacterium tumefaciens (1)
Anabaena (1)
Aliivibrio fischeri (1)
Proteus mirabilis (1)
Naegleria gruberi (1)
Vibrio parahaemolyticus (1)

Organisms

Mus musculus (55)
Homo sapiens (46)
Spodoptera cilium (4)
Danio rerio (3)
Xenopus laevis (2)
Bos taurus (2)
Canis lupus familiaris (2)
Plasmodium falciparum (1)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (300)
ENA (141)
geo (113)
pride (44)
EGA (39)
MassIVE (34)
iProX (9)
MetaboLights (6)
jPOST (5)
GNPS (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Epithelial cell (10)
Cell culture (10)
Kidney (6)
Retina (3)
Photoreceptor layer of retina (2)
Brain (2)
Permanent cell line cell (2)
Cilium (1)
Layer of retina (1)
Olfactory receptor neuron (1)
Epithelium (1)
Layer of hippocampus (1)
Retinal rod (1)
Renal cortical epithelial cell (1)
Ciliary body (1)
Eye (1)
Neural progenitor cell (1)
Ciliary processes (1)
Spermatozoon (1)
Embryonic stem cell (1)
Cell suspension culture (1)
Testis (1)
Embryonic kidney cell line (1)

Disease

Disease free (4)
Breast cancer (2)
Ciliopathy (2)
Non-CF (1)
H9N2 infected (1)
Not Available (1)
Developmental and epileptic encephalopathy 2 (1)
Retinal degeneration (1)
Retinal disease (1)
Neurodevelopmental abnormality (1)
Chronic bronchitis (1)
Mixed disorder as reaction to stress (1)
Autosomal recessive polycystic kidney disease (1)
Alzheimer's disease (1)
Glioblastoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (10)
Data-dependent acquisition (6)
Mass spectrometry (4)
Gel-based experiment (4)
Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500 (1)
DiaPASEF (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Orbitrap Fusion Lumos (13)
Illumina HiSeq 2500 (10)
Illumina NovaSeq 6000 (9)
NextSeq 500 (8)
Illumina HiSeq 2000 (5)
Orbitrap Fusion (5)
Q Exactive (4)
Orbitrap Eclipse (4)
Illumina Genome Analyzer II (3)
Nanostring GeoMx spatial profiler (2)
Illumina HiSeq (2)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
- (2)
NextSeq 2000 (2)
Illumina HiSeq 1500 (2)
Nanostring GeoMx® spatial profiler (1)
Non (1)
Ion Chef™ System and Ion S5™ System or Ion GeneStudio™ S5 Systems. (1)
Affymetrix Gene Atlas System (1)
BAS-1800 [FUJIFILM] (1)
G2505A DNA microarray scanner [Agilent] (1)
None (1)
N/a (1)
Illumina (1)
Ion Torrent S5 XL (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
GC/MS Agilent MSD5977B (1)
Instrument (1)

Publication Date

2013 (78)
2026 (35)
2025 (35)
2024 (32)
2011 (32)
2009 (29)
2022 (28)
2021 (28)
2020 (25)
2015 (24)
2014 (23)
2012 (23)
2010 (21)
2023 (19)
2018 (14)
2008 (14)
2016 (12)
2019 (11)
2017 (10)
2006 (5)
2007 (4)
2005 (2)
2004 (1)

CHEBI ID

CHEBI:18012 (3)
CHEBI:15428 (3)
CHEBI:6650 (3)
CHEBI:30915 (3)
CHEBI:25017 (3)
CHEBI:340824 (2)
CHEBI:37654 (2)
CHEBI:30746 (2)
CHEBI:16010 (2)
CHEBI:26078 (2)
CHEBI:17821 (2)
CHEBI:30769 (2)
CHEBI:48928 (2)
CHEBI:16704 (2)
CHEBI:16335 (2)
CHEBI:16027 (2)
CHEBI:27897 (2)
CHEBI:16449 (2)
CHEBI:17822 (2)
CHEBI:15741 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:26986 (2)
CHEBI:28300 (2)
CHEBI:27266 (2)
CHEBI:16811 (2)
CHEBI:18257 (2)
CHEBI:16708 (2)
CHEBI:26271 (2)
CHEBI:18237 (2)

Metabolite Name

Leucine (3)
Glycine (3)
PRIMA-1 (2)
Delta-Tocotrienol (2)
Dinor-PGF2alpha (2)
ANISOMYCIN (2)
Etamiphylline (2)
RESVERATROL 4'-METHYL ETHER (2)
1-(1-Propenylsulfinyl)propyl propyl disulfide (2)
5-Ethyl-4-methyl-2-pentylthiazole (2)
Dopachrome o-semiquinone (2)
Cis- and trans-L-Mercapto-p-menthan-3-one (2)
2,4-Dihydroxy-nitrophenol (2)
F-Amidine (2)
Flumazenil acid (2)
Sulfaguanidine (2)
Triacanthine (2)
(6S,8Z)-6-Hydroxy-3-oxotetradecenoic acid (2)
Bufuralol (2)
10-Nitrooleate (2)
4'-Hydroxyflurbiprofen (2)
Hexadecanedioic acid mono-L-carnitine ester (2)
8-Isoprostaglandin F2a (2)
Lipoyllysine (2)
MG(0:0/i-15:0/0:0) (2)
Mono-trans-p-coumaroylmesotartaric acid (2)
N-(1-Deoxy-1-fructosyl)proline (2)
L-beta-aspartyl-L-glutamic acid (2)
2-(Methylthiomethyl)-3-phenyl-2-propenal (2)
(S)C(S)S-S-Methylcysteine sulfoxide (2)

First Public Date

2026 (29)
2025 (24)
2024 (23)
2020 (13)
2022 (10)
2018 (9)
2021 (8)
2019 (6)
2023 (5)
2014 (5)
2017 (3)
2016 (3)
2015 (2)
2013 (1)

Classification

protozoa (1)

Study type

Transcription profiling by array (150)
ChIP-seq (61)
RNA-seq of coding RNA (44)
RNA-seq of non coding RNA (7)
Spatial transcriptomics by high-throughput sequencing (6)
Unknown experiment type (5)
Other (4)
Transcription profiling by SAGE (3)
ChIP-chip by tiling array (3)
Animal - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by array (2)
One-color microarray (1)
Animal - Single-cell sequencing (1)
Transcription profiling by tiling array (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2023 (152)
2022 (139)
2025 (121)
2013 (118)
2021 (116)
2020 (115)
2019 (115)
2024 (106)
2015 (95)
2018 (90)
2017 (90)
2014 (88)
2016 (81)
2011 (76)
2012 (74)
2009 (58)
2010 (51)
2008 (31)
2026 (19)
2007 (16)
2006 (11)
2005 (5)
2004 (5)
2002 (3)
2000 (1)
1998 (1)

Lab affiliation

Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany (3)
Stanford University School of Medicine (1)
Professor of Cell Biology and Parasitology Division of Biological Chemistry and Drug Discovery School of Life Sciences University of Dundee DUNDEE DD1 5EH UK (1)
Department of Cellular Biology, University of Georgia, Athens, GA 30602 (1)
Eberhard Karls University Tübingen, Institute for Ophthalmic Research (1)
Program in Molecular Medicine UMass Chan Medical School Worcester MA 01605 USA (1)
Department of Ophthalmology and Visual Science, University of Michigan, Ann Arbor, MI, USA Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI, USA (1)
Institut Necker Enfants Malades (1)
Marsico Lung Institute, UNC-Chapel Hill (1)
School of Bioschemistry, University of Bristol, UK. (1)
Molecular Biology of Retinal Degenerations Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen (1)
Department of Biological Sciences, Molecular and cellular parasitology lab, National University of Singapore,Singpapore (1)
Proteomics Center, Erasmus MC Rottrdam, the Netherlands (1)
Microtubule Organization Group Mechanisms of Disease Programme Institute for Research in Biomedicine (IRB Barcelona) The Barcelona Institute of Science and Technology (BIST) (1)
Department of Anatomy and Cell Biology, McGill University, Canada (1)
University of Cologne (1)
Department of Pharmacology | UW School of Medicine Institute of Stem Cell and Regenerative Medicine | University of Washington, Seattle, USA (1)
UCD School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, D04 V1W8, Ireland. (1)
Wellcome Trust Sanger Institute & The Institute of Cancer Research (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstr. 11 07745 Jena Germany (1)
Cytoskeleton Research Lab Department of Molecular Biology and Genetics Koç University Turkey (1)
Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. (1)
University of Southern Denmark, Department of Biochemistry and Molecular Biology, Campusvej 55, DK-5230 Odense M, Denmark (1)
Department of Neurosurgery, Experimental Neurosurgery, University Hospital, Goethe University, Frankfurt am Main, Germany German Cancer Consortium (DKTK), Partner Site Frankfurt, Frankfurt am Main, Germany German Cancer Research Center DKFZ, Heidelberg, Germany (1)
Proteomics Core Facility, Biomedicial Research Institute, Seoul National University Hospital (1)
Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, 3584CH Utrecht, Netherlands. Netherlands Proteomics Center, 3584CH Utrecht, Netherlands. (1)
Duke University Eye Center (1)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, ZKF 1.055, Universitätsstraße 150, 44801 Bochum, Germany (1)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls-University Tuebingen (1)

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TMT analysis of flagellum skeletons from MIP knockdown parasites

TMT data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'

ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691)

2022-11-07 | MSV000090661 | MassIVE

Kinase activity of DYRK family members is required for regulating primary cilium length, stability and morphology

The dual-specificity tyrosine-phoshorylation-regulated kinase (DYRK) family are multifunctional enzymes crucial for diverse cellular processes, including signaling through the primary cilium. Their dysregulation has been implicated in various cancers and developmental disorders, highlighting the nee...

ORGANISM(S): Homo sapiens (Human)

2025-06-10 | PXD064683 | Pride

Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport.

Cilia are ubiquitous cell surface projections that modulate various sensory- and motility based processes and are implicated in a growing number of multi-organ genetic disorders termed ciliopathies. As new components required for cilium biogenesis and function remain unidentified, we sought to furth...

ORGANISM(S): Caenorhabditis elegans

2011-07-25 | E-GEOD-25633 | biostudies-arrayexpress

Glucagon secretion requires IDE cilium axis

Hyglucagonemia is a hallmark of diabetes caused by dysregulation of glucagon secretion by pancreatic alpha-cells. Although glucose sensing and insulin signaling are well-established regulators, the pathways governing glucagon secretion are not fully understood. Recent evidences suggest that insulin-...

ORGANISM(S): Mus musculus (Mouse)

2026-03-23 | PXD065342 | Pride

Insulin-degrading enzyme-primary cilium axis Glucagon

APEX2 proximity proteomics of microtubule inner proteins FAP45 and FAP52

APEX2-based proximity proteomics data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'

ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691)

2022-11-07 | MSV000090660 | MassIVE

ilSpoCili

Spodoptera cilium

PRJEB109183 | ENA

Cilium induction triggers differentiation of glioma stem cells

PRJNA743803 | ENA

ilSpoCili

Spodoptera cilium, genomic and transcriptomic data

PRJEB109182 | ENA

ilSpoCili1 hap2

Spodoptera cilium genome assembly, ilSpoCili1 haplotype 2