Citrobacter - OmicsDI

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Genomics (929)
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Organisms

Mus musculus (84)
Citrobacter rodentium (15)
Escherichia coli (7)
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mouse gut metagenome (2)
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Citrobacter freundii (2)
Citrobacter portucalensis (2)
Enterobacter cloacae (2)
Escherichia coli str. K-12 substr. MG1655 (1)
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Escherichia coli ATCC 25922 (1)
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Morganella morganii (1)

Organisms

Citrobacter freundii (208)
Mus musculus (70)
Citrobacter portucalensis (44)
Citrobacter braakii (37)
Citrobacter koseri (30)
Citrobacter amalonaticus (25)
Citrobacter rodentium (15)
Citrobacter (13)
Citrobacter sedlakii (12)
Citrobacter werkmanii (12)
Citrobacter farmeri (8)
Citrobacter youngae (8)
mouse gut metagenome (8)
Citrobacter cronae (5)
Citrobacter pasteurii (4)
Citrobacter sp. (4)
Citrobacter arsenatis (4)
Citrobacter gillenii (4)
Citrobacter europaeus (4)
Citrobacter murliniae (3)
Enterobacteriaceae (3)
Bacteria (3)
Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 (3)
feces metagenome (3)
Escherichia coli (3)
human gut metagenome (3)
Citrobacter sp. Lzp2 (2)
Citrobacter rodentium ICC168 (2)
Citrobacter koseri ATCC BAA-895 (2)
Citrobacter freundii CFNIH1 (2)

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Salmonella infectious disease (1)

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EI (1)
ESI (1)
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X500R QTOF (1)
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Liquid Chromatography MS - negative - reverse-phase (1)
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Publication Date

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2020 (8)
2014 (8)
2021 (7)
2019 (6)
2008 (5)
2009 (4)
2017 (4)
2012 (3)
2016 (3)
2011 (2)
2010 (2)
2007 (2)

CHEBI ID

CHEBI:15603 (3)
CHEBI:15756 (3)
CHEBI:89825 (2)
CHEBI:16927 (2)
CHEBI:16708 (2)
CHEBI:16349 (2)
CHEBI:16610 (2)
CHEBI:28790 (2)
CHEBI:27823 (2)
CHEBI:18107 (2)
CHEBI:26806 (2)
CHEBI:28842 (2)
CHEBI:18050 (2)
CHEBI:15682 (2)
CHEBI:27468 (2)
CHEBI:27248 (2)
CHEBI:15318 (2)
CHEBI:15741 (2)
CHEBI:32816 (2)
CHEBI:18019 (2)
CHEBI:17196 (2)
CHEBI:16467 (2)
CHEBI:16750 (2)
CHEBI:17345 (2)
CHEBI:17562 (2)
CHEBI:16919 (2)
CHEBI:16643 (2)
CHEBI:17596 (2)
CHEBI:16828 (2)
CHEBI:166844 (1)

Metabolite Name

3-Hydroxymandelic acid (2)
Uracil (2)
Folinic acid (2)
2-Isopropylmalic acid (2)
4-Pyridoxic acid (2)
Allantoin (2)
Thromboxane B2 (2)
N-Acetylneuraminic acid (2)
Xanthosine (2)
Cholic acid (2)
Stearic acid (2)
Riboflavin (2)
Porphobilinogen (2)
Pantetheine (2)
Palmitic acid (2)
Azelaic acid (2)
Adipic acid (2)
Uric acid (2)
Guanosine (2)
Thymidine (2)
17¦Á-Ethynylestradiol (1)
¦Á-Cyclodextrin (1)
8-iso-15-keto Prostaglandin F2¦Á (1)
3-(2,4-difluoroanilino)-2-(2-thienylsulfonyl)acrylonitrile (1)
2-(3-chlorophenyl)-2-hydroxyacetic acid (1)
6-methyl-5-nitroquinoline (1)
(+/-)8(9)-DiHETE (1)
(6R,S)-5, 10-Methylene-5,6,7,8-tetrahydrofolic acid (1)
Mephedrone-d3 (1)
4-(2,3-dihydrobenzo[b]furan-5-yl)pyrimidine-2-thiol (1)

First Public Date

2025 (117)
2023 (116)
2024 (98)
2022 (89)
2020 (75)
2026 (68)
2021 (66)
2019 (61)
2013 (53)
2014 (40)
2018 (39)
2017 (38)
2015 (30)
2016 (28)
2010 (2)
2012 (1)
2011 (1)

Classification

bacteria (540)
viruses (2)

Study type

Transcription profiling by array (20)
RNA-seq of coding RNA (10)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
ChIP-seq (1)

Release Date

2023 (145)
2020 (137)
2022 (133)
2025 (122)
2021 (122)
2024 (107)
2019 (97)
2018 (93)
2015 (77)
2017 (65)
2016 (53)
2014 (49)
2013 (36)
2012 (30)
2008 (20)
2010 (19)
2026 (18)
2011 (18)
2009 (17)
2005 (15)
2006 (9)
2004 (8)
2003 (8)
2002 (6)
2001 (6)
1998 (6)
2007 (5)
2000 (5)
1999 (5)
1995 (1)

Lab affiliation

Pacific Northwest National Laboratory, USA (3)
The Institute of Cancer Research (3)
Functional Proteomics, ICR (2)
ICR, Functional Proteomics (2)
Animal Sciences Department, Ohio Sate University (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Center for Molecular Bacteriology and Infection, Imperial College London (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 ( lab head ) (1)
College of Veterinary Medicine, Kansas State University, Manhattan, KS, United States (1)
Cumming School of Medicine, Department of Physiology and Pharmacology, University of Calgary, Calgary, Alberta, T2N 4N1, Canada. (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Microbiology and Immunology, University of Melbourne Peter Doherty Institute for Infection and Immunity 792 Elizabeth St, Melbourne 3000, Australia (1)
Department of Pathology and Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA. (1)
Division of Gastroenterology, Department of Pediatrics, University of British Columbia, Vancouver, BC, Canada. (1)
Drug Metablism and Pharmackinetics, Abbvie Bioresearch Center (1)
Institute of Cancer Research (1)
Institute of Cancer Research, London (1)
Laboratory for Applied Science and Technology in Health, Carlos Chagas Institute, Fiocruz Parana, Parana, Brazil (1)
Pacific Northwest National Laboratory (1)
Peter Lasch, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
Proteomics laboratory, Mucin Biology Groups, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Sweden (1)
Robert Koch Institute, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
The Institute of Cancer Research, London (1)
University of Ljubljana, Biotechnical Faculty, Department of biology, Chair of biochemistry, Večna pot 111, 1000 Ljubljana (1)
Vanderbilt University Proteomics Core (1)
Wellcome Trust Sanger Institute (1)

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Analysis of the evolutionary adaptation of an AraC-like global regulatory protein in the murine enteric pathogen Citrobacter rodentium

An experiment to test the equivalence of the Citrobacter rodentium RegA and E.Coli SMS 3-5 homologue 8 Conditions (4 Genotypes by 2 treatments) in duplicate. Reference design without dye swaps.

ORGANISM(S): Citrobacter rodentium

2015-02-19 | E-GEOD-57689 | biostudies-arrayexpress

Control of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA

Identification of the targets of RegA with and without bicarbonate stimulation by comparing RegA knockout to multicopy RegA transgenics. RegA is an AraC like transcription factor identified in a mutational screen for virulence genes in Citrobacter rodentium, an attaching and effacing pathogen that ...

ORGANISM(S): Citrobacter rodentium

2010-05-19 | E-GEOD-12876 | biostudies-arrayexpress

RNA-Seq of C. rodentium

Whole genome trancription study of Citrobacter rodentium grown in rich media.

ORGANISM(S): Citrobacter rodentium

2011-02-12 | E-MTAB-502 | biostudies-arrayexpress

Citrobacter Rodentium HppXCROD2: A plasmid-encoded H-NS selectively binds its own plasmid

ChIP-seq of H-NSchr, HppXCROD2, and sigma 70 in Citrobacter rodentium ICC168 and E. coli MG1655

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2026-05-25 | E-MTAB-17049 | biostudies-arrayexpress

Citrobacter rodentium ICC168 CPX SILAC

SILAC experiment to investigate proteome changes in response to the disruption of CPX in Citrobacter rodentium ICC168.

ORGANISM(S): Citrobacter rodentium ICC168

2019-01-07 | PXD009049 | Pride

Gene expression in IL-10-deficient and wild-type mice following Citrobacter rodentium infection

To further understand immune mechanims involved in regulating intestinal inflammation, we employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential of regulating inflammation in the absence of IL-10. Whole colon tissue from IL-10-deficient and...

ORGANISM(S): Mus musculus

2014-03-12 | E-GEOD-55812 | biostudies-arrayexpress

Bic v wt expression array1

global gene expression in caecal patch and colon of miR-155 deficient and C57BL/6 mice following infection with Citrobacter rodentium

ORGANISM(S): Mus musculus

2012-09-30 | E-MTAB-1301 | biostudies-arrayexpress

Citrobacter freundii

Citrobacter freundii Genome sequencing and assembly

PRJNA544639 | ENA

Citrobacter freundii

Citrobacter freundii Genome sequencing

PRJNA1087705 | ENA