Clarke R R - OmicsDI

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Unknown (2825)
Transcriptomics (89)
Genomics (81)
Proteomics (39)
Metabolomics (12)
Models (2)

Organisms

Homo sapiens (140)
Mus musculus (29)
Arabidopsis thaliana (6)
Rattus norvegicus (5)
Saccharomyces cerevisiae (4)
Cricetulus griseus (2)
Escherichia coli (2)
Bombus terrestris (2)
Equus caballus (2)
Canis lupus familiaris (1)
Felis catus (1)
Neogale vison (1)
Colinus virginianus (1)
Yersinia pseudotuberculosis (1)
Hordeum vulgare (1)
Heterocephalus glaber (1)
Ovis aries (1)
Gallus gallus (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Drosophila melanogaster (1)
Bos taurus (1)
Chlamydia trachomatis L2/434/Bu (1)
Fasciola hepatica (1)
Galloanserae (1)
Latrodectus hesperus (1)
Macaca mulatta (1)
Parasteatoda tepidariorum (1)
SARS coronavirus WHU (1)
Spodoptera frugiperda (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (101)
EGA (68)
pride (33)
MetaboLights (12)
MassIVE (6)
BioModels (2)
ENA (2)
geo (1)

Tissue

Cell culture (5)
Heart (3)
B cell (2)
Cardiac muscle tissue (2)
Cell line cell (2)
Stem cell (2)
Astrocyte (1)
B-lymphocyte (1)
Blood plasma (1)
Bone cell (1)
Brain (1)
Breast lobe (1)
Cervical carcinoma cell (1)
Chronic lymphocytic leukemia cell (1)
Colon (1)
Egg (1)
Embryonic stem cell (1)
Epithelial cell (1)
Extracellular vesicle (1)
Feces (1)
Fibroblast (1)
Integument (1)
Keratinocyte (1)
Leaf (1)
Microglial cell (1)
Neural cell (1)
Osteosarcoma cell line (1)
Plant cell (1)
Prokaryotic cell (1)
Promyelocyte (1)

Disease

Chronic lymphocytic leukemia (2)
Cerebral degeneration (1)
Huntington's disease (1)
Ocular albinism (1)
Parkinson's disease (1)
Retinal degeneration (1)
Retinal detachment (1)
Retinal disease (1)
Multibacillary (1)
Non-CF (1)
Head and neck squamous cell carcinoma (1)
Lung cancer (1)
Acute leukemia (1)
Age related macular degeneration (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Atopic dermatitis (1)
Bone cancer (1)
COVID-19 (1)
Cardiovascular system disease (1)
Chlamydia trachomatis infectious disease (1)
Colon cancer (1)
Frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (1)
Myocardial ischemia (1)
Osteoarthritis (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (19)
Mass spectrometry (6)
Bottom-up proteomics (5)
Mass spectrometry assay (4)
Gel-based experiment (3)
SWATH MS (3)
Data-dependent acquisition (2)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
ILLUMINA, Illumina HiSeq 2000 (1)
ISelect Beadchip (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina 450K, Bisulfite-Seq (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Unknown (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (2)
Orbitrap Eclipse (2)
Q Exactive (2)
Gas Chromatography MS - positive (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina Hybridisation Oven (1)
Illumina iScan (1)
Unix (1)
Variable Atmosphere Incubator (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
6545 Q-TOF LC/MS (1)
Orbitrap Ascend (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive GC Orbitrap (1)
Q Exactive HF (1)
TSQ Quantiva (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (19)
2013 (18)
2022 (12)
2012 (12)
2014 (11)
2011 (10)
2026 (8)
2017 (7)
2016 (7)
2025 (7)
2010 (6)
2023 (6)
2021 (6)
2024 (5)
2009 (4)
2008 (4)
2019 (3)
2018 (3)
2006 (3)
2007 (2)
2020 (2)

UNIPROT ID/AC

P36897 (1)
P37173 (1)
Q13485 (1)
Q15796 (1)

CHEBI ID

CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:18012 (4)
CHEBI:18237 (4)
CHEBI:22653 (4)
CHEBI:22660 (4)
CHEBI:25017 (4)
CHEBI:25094 (4)
CHEBI:28044 (4)
CHEBI:15366 (3)
CHEBI:15891 (3)
CHEBI:15940 (3)
CHEBI:16196 (3)
CHEBI:16543 (3)
CHEBI:16704 (3)
CHEBI:16811 (3)
CHEBI:17234 (3)
CHEBI:18186 (3)
CHEBI:24898 (3)
CHEBI:26271 (3)
CHEBI:26986 (3)
CHEBI:27266 (3)
CHEBI:28300 (3)
CHEBI:29016 (3)
CHEBI:30768 (3)
CHEBI:30772 (3)
CHEBI:6650 (3)
CHEBI:133244 (2)
CHEBI:145247 (2)
CHEBI:18367 (1)

Metabolite Name

Phenylalanine (5)
Tyrosine (5)
Valine (5)
Alanine (4)
Arginine (4)
Asparagine (4)
Isoleucine (4)
Leucine (4)
Pantothenic acid (4)
Tryptophan (4)
Uridine (4)
Aspartic acid (3)
Choline (3)
Creatine (3)
Glucose (3)
Glycine (3)
Histidine (3)
Inosine (3)
Lysine (3)
Malic acid (3)
Methionine (3)
Proline (3)
Succinic acid (3)
Taurine (3)
Threonine (3)
Traumatic acid (3)
Xanthosine (3)
1-Methyladenosine (2)
4-Guanidinobutyric acid (2)
4-Hydroxybenzaldehyde (2)

IsPrivate

False (2)

First Public Date

2015 (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (73)
ChIP-seq (11)
RNA-seq of coding RNA (7)
Methylation profiling by array (3)
ChIP-chip by tiling array (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (302)
2021 (292)
2025 (256)
2023 (254)
2024 (239)
2019 (205)
2020 (203)
2018 (194)
2015 (163)
2017 (143)
2014 (136)
2016 (129)
2013 (88)
2012 (78)
2011 (67)
2010 (45)
2026 (38)
2009 (34)
2008 (23)
2006 (11)
2007 (7)
2003 (5)
2004 (4)
2002 (3)
2005 (2)
2001 (2)
2000 (1)
1991 (1)

Lab affiliation

College of Life Sciences, University of Dundee (2)
CDSS Bioanalytical Facility, LIV-SRF, Dept. Pharmacology & Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
CDSS Bioanalytical Facility, Liverpool Shared Research Facilities, University of Liverpool (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, UK (1)
Centre for Cancer Drug Discovery Institute of Cancer Research London (1)
Centre for Gene Regulation and Expression University of Dundee (1)
Centre for Proteome Research University of Liverpool Liverpool L69 7ZB (1)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (1)
Centre for Proteomic Research, University of Southampton (1)
Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biology, Washington and Lee University (1)
Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy (1)
Discovery Proteomics Facility University of Oxford (1)
Exploring the Dynamics of Proteomes laboratory; UGA/CEA/Inserm U1038 CEA/Grenoble 17 Avenue des Martyrs F-38054 Grenoble (1)
German cancer research center (DKFZ), Germany (1)
Head of School, Senior Lecturer, School of Biotechnology, Fundamental and Translational Immunology Group Leader Dublin City University, Dublin 9. Ireland (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK (1)
MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq 03 20 33 71 12 https://msap-lab.fr/ (1)
Manchester Cell Matrix Centre | Division of Cancer Sciences | School of Medical Sciences | Faculty of Biology, Medicine and Health The University of Manchester | Michael Smith Building | Oxford Road | Manchester M13 9PT (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
McGill University Department of Pharmacology and Therapeutics Montreal, QC (1)
Pacific Northwest National Laboratory (1)
Proteomics Resource Center, The Rockefeller University, New York, 10065, NY, USA (1)
School of Biomedical Sciences, Faculty of Medicine, Nursing and Health Sciences, Monash University, Wellington Road, Clayton, Victoria 3800, Australia. (1)
Sonja Hess, Dr. rer. nat. Director, Dynamic Omics AstraZeneca R&D Antibody Discovery and Protein Engineering One Medimmune Way, Gaithersburg, MD 20878 (1)
The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK Department of Neuromuscular Diseases, Queen Square Institute of Neurology, University College London, London, WC1N 3BG, UK (1)
The Francis Crick Institute, London, UK Department of Neuromuscular Diseases, University College London, UK National Hospital for Neurology and Neurosurgery, UCL NHS Foundation Trust, London, UK (1)
The University of Melbourne (1)
University of Catanzaro, Viale Europa, Italy (1)

3050 Results

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