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MetabolomicsNMR-based metabolomics identifies patients at high risk of death within two years after acute myocardial infarction in the AMI-Florence II cohort
Risk stratification and management of acute myocardial infarction patients continue to be challenging despite considerable efforts made in the last decades by many clinicians and researchers. The aim of this study was to investigate the metabolomic fingerprint of acute myocardial infarction using nu...
2018-10-02 | MTBLS395 | MetaboLights
MetabolomicsPlant-to-plant variability in root metabolite profiles of 19 Arabidopsis thaliana accessions is substance-class dependent
Natural variation of secondary metabolism between different accessions of Arabidopsis thaliana has been studied extensively. In this study, we extended the natural variation approach by including biological variability and analyzed root metabolic patterns as well as their variability between plants ...
2022-11-18 | MTBLS338 | MetaboLights
TranscriptomicsTranscription profiling of mouse RAG1 knockout CD4+ T cells to investigate the effect of absence of interaction with MHC class II on memory CD4 T cells
Effect of absence of interaction with MHC class II on memory CD4 T cells
ORGANISM(S): Mus musculus 
2007-03-01 | E-MEXP-890 | biostudies-arrayexpress
MetabolomicsEvidence that class I glutamine amidotransferase, GAT1_2.1, acts as a glutaminase in roots of Arabidopsis thaliana (part II)
Not available
ORGANISM(S): Arabidopsis thaliana 
ST001812 | MetabolomicsWorkbench
ProteomicsDeep motif deconvolution of HLA-II peptidomes
CD4 T cells are key for priming and regulating immune recognition of infected and cancer cells, but predictions of class II epitopes have limited accuracy. We profiled over 100’000 HLA-II ligands by Mass Spectrometry and developed a novel motif deconvolution algorithm to analyze these data. Our work...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-10-18 | MSV000096130 | MassIVE
TranscriptomicsGenome-wide Analysis of Class IIa Histone Deacetylase Regulation of Hepatic Gluconeogenesis
Analysis of Class II Histone Deacetylase (HDAC) regulation of hepatic gluconeogenesis at the gene expression level. We show that in liver, Class IIa HDACs (HDAC4, 5, and 7) are all phosphorylated and excluded from the nucleus by AMPK family kinases. In response to the fasting hormone glucagon, Class...
ORGANISM(S): Mus musculus 
2011-09-08 | E-GEOD-20979 | biostudies-arrayexpress
ProteomicsHLA class II ligandome of colon cancer tissues for neoantigen identification
MS data of HLA class II ligandome of human colon cancer tissues
ORGANISM(S): Homo Sapiens (human) 
2024-09-25 | PXD054060 | JPOST Repository
ProteomicsTuning DO:DM ratios modulates HLA class II immunopeptidomes
Major Histocompatibility Complex Class II antigen presentation underlies a wide range of immune responses in health and disease. Although peptide ligand binding affinity has been the major focus for explaining and predicting class II antigens, we know that the levels and activities of accessory mol...
ORGANISM(S): Homo sapiens (Human) 
2023-10-24 | PXD024392 | Pride
Hla-ii Mhc Dm Antigen presentation Do Orbitrap 
GenomicsEquine MHC class II
Sequencing and annotation of equine MHC class II region
PRJEB15527 | ENA
GenomicsFull-length HLA class II sequences
Full-length HLA class II sequences
PRJEB42469 | ENA
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