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TranscriptomicsBrassica nigra challenged by Pieris brassicae, eggs of Pieris brassicae, Xanthomonas campestris pv. raphani, Brevicoryne brassicae or by combined stresses eggs of P. brassicae / P. brassicae, X. campestris / P. brassicae, B. brassicae / P. brassicae
Brassica nigra plants, a Brassicaceae close to Arabidopsis thaliana, was used for combined stresses experiments. In this study, we performed a whole-genome microarray analysis on five-week-old plants and compared untreated plants and plants treated different single or dual stresses: the larvae Pieri...
ORGANISM(S): Brassica nigra 
2017-03-31 | E-MTAB-5059 | biostudies-arrayexpress
TranscriptomicsA compendium of antibiotic-induced transcription profiles reveals broad regulation of P. multocida virulence genes
Treatment of bacteria with antibiotics at or close to the inhibitory concentration leads to specific transcriptional responses often affecting target genes and targets pathways. A dataset of transcriptional profiles (compendium) induced by antibiotics with known mode-of-action (MoA) can be used to g...
ORGANISM(S): Pasteurella multocida 
2008-06-01 | E-GEOD-10051 | biostudies-arrayexpress
ProteomicsThe Parkinson's disease protein alpha-synuclein is a direct modulator of Processing-bodies and mRNA stability
Hallacli E, Kayatekin C, Nazeen S, Wang XH, Sheinkopf Z, Sathyakumar S, Sarkar S, Jiang X, Dong X, Di Maio R, Wang W, Keeney MT, Felsky D, Sandoe J, Vahdatshoar A, Udeshi ND, Mani DR,Carr SA, de Jager P, Myers CL, Lindquist S, Greenmyre TJ, Bartel DP, Feany MB, Sunyaev S, Chung CY and Khurana V. Alp...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-03-09 | MSV000089026 | MassIVE
TranscriptomicsBrassica nigra challenged by ozone, Pieris brassicae and both ozone followed by P. brassicae feeding.
Brassica nigra plants, a Brassicaceae close to Arabidopsis thaliana, was used for combined stresses experiments. In this study, we performed a whole-genome microarray analysis on five-week-old plants and compared untreated plants and plants treated with ozone at 70 ppb, larvae of Pieris brassicae or...
ORGANISM(S): Brassica nigra 
2017-02-10 | E-MTAB-5030 | biostudies-arrayexpress
TranscriptomicsGenome-scanning of Amazonian Plasmodium falciparum shows subtelomeric instability and clindamycin resistant parasites
Here we fully characterize the genomes of 14 Plasmodium falciparum patient isolates taken recently from the Iquitos regions using genome-scanning, a microarray-based technique which delineates the majority of single-base changes, indels and copy number variants distinguishing the coding regions of t...
ORGANISM(S): Plasmodium falciparum 
2010-08-04 | E-GEOD-22861 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of Pseudomonas aeruginosa PAO1161 strain and its parA and parB mutants
Representatives of two families of bacterial Par proteins, ParA and ParB, are encoded by the majority of bacterial chromosomes in the close vicinity of oriC. ParA(Soj) and ParB(Spo0J) proteins of Pseudomonas aeruginosa are both important for optimal growth, nucleoids segregation, cell division and d...
ORGANISM(S): Pseudomonas aeruginosa 
2014-02-12 | E-GEOD-47031 | biostudies-arrayexpress
UnknownPorous Organic Polymer-Derived Fe2P@N,P-Codoped Porous Carbon as Efficient Electrocatalysts for pH Universal ORR.
Not available
S-EPMC7143406 | biostudies-literature
TranscriptomicsGene expression modulation by paraquat-induced oxidative stress conditions in P. brasiliensis
Paracoccidioides brasiliensis is a thermodimorphic fungus associated with paracoccidioidomycosis (PCM), the most common systemic mycosis in Latin America. The infection is initiated by inhalation of environmental dispersed conidia produced by the saprophytic phase of the fungus. In the lungs, P. bra...
ORGANISM(S): Paracoccidioides brasiliensis 
2013-06-14 | E-GEOD-41148 | biostudies-arrayexpress
UnknownExpansion of the Ligand Knowledge Base for Chelating P,P-Donor Ligands (LKB-PP).
Not available
S-EPMC4034078 | biostudies-literature
TranscriptomicsLandscape and dynamics of transcription initiation in P. falciparum
The lack of a comprehensive map of transcription start sites (TSS) across P. falciparum genome has hampered advances in decrypting the molecular mechanisms underlying regulation of gene expression in the malaria parasite. In eukaryotic model organisms, development of genome-wide approaches and next-...
ORGANISM(S): Plasmodium falciparum 
2016-03-02 | E-GEOD-68982 | biostudies-arrayexpress
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