Cofactor specificity

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Unknown (539)
Genomics (54)
Proteomics (42)
Transcriptomics (35)
Other (4)
Metabolomics (3)

Organisms

Homo sapiens (36)
Mus musculus (30)
Drosophila melanogaster (7)
Saccharomyces cerevisiae (5)
Caenorhabditis elegans (4)
Escherichia coli (3)
Trichinella spiralis (1)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Xenopus laevis (1)
Corynebacterium glutamicum ATCC 13032 (1)
Arabidopsis thaliana (1)
Ciona robusta (1)
synthetic construct (1)
Cricetulus griseus (1)
Caenorhabditis briggsae (1)
Mycolicibacterium smegmatis (1)
Nitrosopumilus maritimus SCM1 (1)
Phaeodactylum tricornutum CCAP 1055/1 (1)
Pristionchus pacificus (1)
Staphylococcus aureus (1)

Organisms

Mus musculus (8)
Homo sapiens (6)
Drosophila melanogaster (5)
Saccharomyces cerevisiae (4)
Acetivibrio thermocellus ATCC 27405 (1)
Ciona robusta (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (34)
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Tissue

Cell culture (8)
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Disease

Endometrioid carcinoma (1)
Breast cancer (1)
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Chronic myeloid leukemia (1)
Colon cancer (1)
Influenza (1)
Osteosarcoma (1)

Technology Type

Mass Spectrometry (29)
Affinity purification coupled with mass spectrometry proteomics (10)
Shotgun proteomics (10)
Bottom-up proteomics (7)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Gel-based experiment (2)
HDMSE (1)

Instrument Platform

AB SOLiD 4 System (4)
LTQ (4)
LTQ Orbitrap (4)
NextSeq 550 (2)
NextSeq 2000 (1)
Illumina MiSeq (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Q Exactive Orbitrap (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (20)
2026 (12)
2023 (9)
2013 (6)
2022 (6)
2021 (6)
2024 (6)
2020 (6)
2025 (5)
2017 (5)
2011 (4)
2019 (4)
2012 (3)
2016 (2)
2010 (2)
2018 (2)
2009 (1)
2007 (1)
2014 (1)
2005 (1)

UNIPROT ID/AC

A3QMC5 (4)
A7DT45 (4)
B3CJ34 (4)
B3GWA1 (4)
B6EU49 (4)
C1P640 (4)
D0IMZ5 (4)
D1MN85 (4)
D3YT36 (4)
D5MCN2 (4)
E9RKC7 (4)
G1K0V8 (4)
G4S034 (4)
G4SLH0 (4)
G4SPY0 (4)
G5EBH3 (4)
G5EBI0 (4)
G5EBP5 (4)
G5EBR1 (4)
G5EBY3 (4)
G5EC16 (4)
G5EC78 (4)
G5ECL3 (4)
G5ECM6 (4)
G5ECU1 (4)
G5ECU5 (4)
G5ED07 (4)
G5ED27 (4)
G5ED29 (4)
G5EDA3 (4)

CHEBI ID

CHEBI:10017 (1)
CHEBI:132284 (1)
CHEBI:133038 (1)
CHEBI:143241 (1)
CHEBI:145240 (1)
CHEBI:15318 (1)
CHEBI:15355 (1)
CHEBI:15698 (1)
CHEBI:15741 (1)
CHEBI:157877 (1)
CHEBI:15891 (1)
CHEBI:15901 (1)
CHEBI:15968 (1)
CHEBI:16003 (1)
CHEBI:16038 (1)
CHEBI:16040 (1)
CHEBI:16227 (1)
CHEBI:16235 (1)
CHEBI:16244 (1)
CHEBI:16335 (1)
CHEBI:16411 (1)
CHEBI:16440 (1)
CHEBI:16449 (1)
CHEBI:16551 (1)
CHEBI:16704 (1)
CHEBI:16708 (1)
CHEBI:16750 (1)
CHEBI:16765 (1)
CHEBI:16811 (1)
CHEBI:16924 (1)

Metabolite Name

Guanosine (2)
Inosine (2)
Phenylalanine (2)
Taurine (2)
Thymine (2)
Uracil (2)
Valine (2)
((6-O-Hexopyranosylhexopyranosyl)oxy)(phenyl)acetonitrile (1)
(+)-Ritodrine (1)
(-)-.alpha.-Kainic acid (1)
(-)-farrerol (1)
(.+,-.)-11-Nor-.DELTA.9-tetrahydrocannabinol-9-carboxylic acid (1)
(.+,-.)-Laurotetanine (1)
(.+,-.)-Mahanine (1)
(2-aminoethoxy)[2-[docosa-4.7.10.13.16.19-hexaenoyloxy]-3-[hexadec-1-en-1-yloxy]propoxy]phosphinic acid (1)
(2-aminoethoxy)[2-[hexadec-9-enoyloxy]-3-[octadeca-1.11-dien-1-yloxy]propoxy]phosphinic acid (1)
(2-aminoethoxy)[3-[hexadec-1-en-1-yloxy]-2-(hexadecanoyloxy)propoxy]phosphinic acid (1)
(2-aminoethoxy)[3-[hexadec-1-en-1-yloxy]-2-[hexadec-9-enoyloxy]propoxy]phosphinic acid (1)
(2-{[3-hydroxy-2-tetradecanamidooctadec-4-en-1-yl phosphonato]oxy}ethyl)trimethylazanium (1)
(2R)-7-Methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl .beta.-D-glucopyranoside (1)
(2r)-2-hydroxybut-3-enylglucosinolate (1)
(2s,3s,4s,5r,6r)-6-[[(2s,3r,4r,6ar,6bs,8as,12as,14br)-4-carboxy-8a-[(2s,3r,4s,5s)-3-[(2s,3r,4s,5r,6s)-3,4-dihydroxy-6-methyl-5-[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-4,5-dihydroxyoxan-2-yl]oxycarbonyl-2-hydroxy-4,6a,6b,11,11,14b-hexamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
(2s,3s,4s,5r,6r)-6-[[(2s,3r,4r,6ar,6bs,8as,12as,14br)-4-formyl-2-hydroxy-4,6a,6b,11,11,14b-hexamethyl-8a-[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxycarbonyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
(3E)-4-(1-Hydroxy-2,2,6-trimethyl-4-oxocyclohexyl)but-3-en-2-yl hexopyranoside (1)
(4R,9.beta.,16.alpha.,23E)-16,20,25-Trihydroxy-9,10,14-trimethyl-1,11,22-trioxo-4,9-cyclo-9,10-secocholesta-2,5,23-trien-2-yl .beta.-D-glucopyranoside (1)
(5-Benzoyloxy-1,2,6-trihydroxycyclohex-3-en-1-yl)methyl benzoate (1)
(5e)-4,9-dihydroxy-6-methyl-3,10-dimethylidene-4,7,8,9,11,11a-hexahydro-3ah-cyclodeca[b]furan-2-one (1)
(6E)-8-Methyl-6-nonenoic acid (1)
(E)-1-(4-Hydroxy-2-methoxyphenyl)-3-(4-hydroxyphenyl)prop-2-en-1-one (1)
(E)-N-[2-Hydroxy-2-(4-hydroxyphenyl)ethyl]-3-(4-hydroxyphenyl)prop-2-enamide (1)

First Public Date

2026 (5)
2023 (5)
2022 (5)
2021 (4)
2019 (3)
2025 (2)
2016 (2)
2015 (2)
2014 (2)
2024 (1)
2018 (1)
2017 (1)

Study type

Transcription profiling by array (12)
ChIP-seq (10)
RNA-seq of coding RNA (4)
Other (3)
RNA-seq of coding RNA from single cells (2)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (43)
2018 (39)
2024 (35)
2022 (34)
2025 (33)
2016 (33)
2020 (33)
2023 (32)
2021 (32)
2013 (29)
2019 (29)
2011 (28)
2012 (25)
2014 (25)
2009 (23)
2010 (17)
2017 (17)
2007 (15)
2008 (13)
2026 (7)
2004 (7)
2006 (6)
2005 (5)
2001 (3)
2000 (3)
2003 (2)
1997 (2)
2002 (1)
1998 (1)
1993 (1)

Lab affiliation

IGMM, CNRS, Univ Montpellier, Montpellier, France (5)
1. Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, USA 2. Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA (1)
Chair of Biochemistry I, Biocenter, University of Wuerzburg (1)
Department of Cell Biology and Physiology, McAllister Heart Institute, The University of North Carolina at Chapel Hill (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (1)
Department of Infectious Disease, Faculty of Medicine, Imperial College London, London, United Kingdom. (1)
Dipartimento di Medicina Veterinaria, Università degli Studi di Milano, Milano, Italy (1)
Institute of Biochemistry II • Goethe University Medical School University Hospital Building 75 • Theodor-Stern-Kai 7 • 60590 Frankfurt, Germany (1)
Institute of Molecular Biology, Mainz, Germany (1)
Laboratory of RNA Virus Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (1)
Max Planck Unit for the Science of Pathogens, Berlin, Germany (1)
Molecular Biology, Princeton University, USA (1)
Okinawa Institute of Science and Technology (OIST), Okinawa, Japan (1)
Oncology (1)
Proteomics Platform Necker, Université de Paris - Structure Fédérative de Recherche Necker, Inserm US24/CNRS UMS3633, Paris, France. (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
TU München Lehrstuhl Organische Chemie II Department of Chemistry Lichtenbergstr. 4 85747 Garching bei München (1)
Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford OX3 7FZ, UK (1)
Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Berlin, Germany (1)
Universisity of Copehangen, Novo Nordisk Foundation Center for Protein Research (1)
University College London, Institute of Structural and Molecular Biology, Darwin Building Room 101A, London, WC1E 6BT, United Kingdom (1)
University of Washington (1)
de Duve Institute UCLouvain and WELBIO (1)

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Membrane lipid as cofactor of cargo uptake and release by box-like lipid transfer proteins

Lipid transfer proteins (LTPs) shuttle their cargo lipids between cellular membranes. LTPs facilitate the costly extraction of a lipid from a donor membrane, and its delivery into the acceptor membrane, but the mechanisms remain poorly understood. We combined extensive molecular dynamics simulations...

2026-10-06 | MTBLS15933 | MetaboLights

Mining the cellular inventory of pyridoxal phosphate-dependent enzymes with functionalized cofactor mimics

Pyridoxal phosphate (PLP) is an enzyme cofactor required for the chemical transformation of biological amines in numerous essential cellular processes. PLP-dependent enzymes (PLP-DEs) are ubiquitous and evolutionarily diverse, making their classification based on sequence homology challenging. This ...

ORGANISM(S): Staphylococcus aureus

2018-10-17 | PXD006483 | Pride