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TranscriptomicsTranscriptomic analysis of (Group I) Clostridium botulinum ATCC 3502 cold shock response
Profound understanding of the mechanisms foodborne pathogenic bacteria utilize in adaptation to the environmental stress they encounter during food processing and storage is of paramount importance in design of control measures. Chill temperature is a central control measure applied in minimally pro...
ORGANISM(S): Clostridium botulinum 
2014-02-24 | E-GEOD-51465 | biostudies-arrayexpress
TranscriptomicsRNA-seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression
Background: Moraxella catarrhalis, a major nasopharyngeal pathogen of the human respiratory tract, is exposed to rapid downshifts of environmental temperature when humans breathe cold air. The prevalence of pharyngeal colonization and respiratory tract infections caused by M. catarrhalis is greatest...
ORGANISM(S): Moraxella catarrhalis O35E 
2013-07-22 | E-GEOD-46256 | biostudies-arrayexpress
TranscriptomicsTranslational profiling of HEK293 cells exposed to cold shock (32 degrees C) and untreated (37 degrees C)
This experiment investigates the effect of mild cold-shock (32 degrees C, 24 hours) on the translatome of human HEK293 cells. After cold-shock, cells were treated with cycloheximide to block elongation, then sucrose density gradients were used to separate post-nuclear extracts into polysome and subp...
ORGANISM(S): Homo sapiens 
2017-02-23 | E-MTAB-5437 | biostudies-arrayexpress
TranscriptomicsTranscriptomics of rapid cold-hardening and cold shock recovery in Sarcophaga bullata
The ability to rapidly respond to changes in temperature is critical for insects and other ectotherms living in variable environments. In a physiological process termed rapid cold-hardening (RCH), exposure to non-lethal low temperature allows many insects to significantly increase their cold toleran...
ORGANISM(S): Neobellieria bullata 
2012-03-14 | E-GEOD-36483 | biostudies-arrayexpress
TranscriptomicsIn(1)BM2(reinverted) males: reared at room temperature vs. Cold shock treatment
Cold exposure leads to alteration in the structure of the male sex chromosome of the mutant strain In(1)BM2(reinverted). Genome wide expression profiling was used to identify candidate genes involved in the expression of this phenotype. Adult male flies were exposed to cold shock at 12±1°C for 4...
ORGANISM(S): Drosophila melanogaster 
2015-11-05 | E-GEOD-74673 | biostudies-arrayexpress
ProteomicsProteome cold-shock response in the extremely acidophilic archaeon, Cuniculiplasma divulgatum
The archaea Cuniculiplasma divulgatum are abundant in acidic environments with low to moderate temperatures. However, the molecular mechanisms underlying its ability to thrive at low temperatures remain unexplored. Using mass spectrometry (MS)-based proteomics, we analysed the effect of short-term (...
ORGANISM(S): Cuniculiplasma divulgatum Archaea 
2020-05-26 | PXD017828 | Pride
Cold shock Thermoplasmatales Acidophilic archaea Cuniculiplasma Acid mine drainage systems Acidic environments Proteome 
TranscriptomicsThe effect of short-term cold treatment in wheat.
One day cold treatment of wheat (Triticum aestivum L.) lines Chinese Spring, Cheyenne and two 5A chromosome substitution lines of Chinese Spring, Chinese Spring(Cheyenne 5A) and Chinese Spring(Spelta 5A)
ORGANISM(S): Triticum aestivum 
2016-10-22 | E-MTAB-3937 | biostudies-arrayexpress
TranscriptomicsRNA-seq of E. coli MG1655 under temperature shocks, antibiotics, and combined treatments
Bacteria experience concurrent stresses in nature; here we tested how temperature shifts modulate antibiotic responses in Escherichia coli. We profiled RNA-seq of Escherichia coli K-12 MG1655 grown in LB (37 °C, 250 rpm) and exposed to cold shock (15 °C), heat shock (42 °C), antibiotics (norfloxacin...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2026-09-22 | E-MTAB-15747 | biostudies-arrayexpress
TranscriptomicsInfluence of cold shock on total mRNA expression profile during harvesting Thermus thermophilus HB8 cells.
In order to investigate the influence of the cold shock during harvesting the cells, we compare the expression profile of mRNA between in T. thermophilus HB8 cells harvested after arrested the growth on ice and in those harvested after addition of cold ethanol. Three wild-type strain of T. thermophi...
ORGANISM(S): Thermus thermophilus HB8 
2010-10-15 | E-GEOD-19723 | biostudies-arrayexpress
TranscriptomicsModerate stress acclimation provides immunity to stress by rewiring regulatory networks and inducing genes with protective functions in Cassava
Stress acclimation is an effective mechanism that plants acquired for adaption to dynamic environmental conditions. After undergoing cold acclimation, plants become more tolerant to cold stress. In order to understand the mechanism of cold acclimation, we performed a systematic, comprehensive study ...
ORGANISM(S): Manihot esculenta 
2014-08-18 | E-GEOD-52176 | biostudies-arrayexpress
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