Collagenase-1 - OmicsDI

Show results for

Transcriptomics (1076)
Unknown (445)
Genomics (374)
Proteomics (105)
Metabolomics (30)
Other (2)
Models (1)
Methylation profiling (1)

Organisms

Mus musculus (494)
Homo sapiens (469)
Rattus norvegicus (64)
Salmo salar (14)
Drosophila melanogaster (13)
Danio rerio (13)
Sus scrofa (12)
Bos taurus (8)
Pimephales promelas (6)
Daphnia magna (5)
Xenopus laevis (4)
Canis lupus familiaris (3)
Gallus gallus (3)
Hyalella azteca (2)
Macaca mulatta (2)
Xenopus tropicalis (2)
synthetic construct (2)
Oryctolagus cuniculus (2)
Heterocephalus glaber (2)
Ampelisca abdita (1)
Papio (1)
Pongo abelii (1)
Mus musculus castaneus (1)
Osmerus mordax (1)
Capra hircus (1)
Mytilus edulis (1)
Yarrowia lipolytica (1)
Macaca fascicularis (1)
mixed sample (1)
Staphylococcus aureus (1)

Organisms

Mus musculus (204)
Homo sapiens (68)
Rattus norvegicus (14)
Danio rerio (4)
Oryctolagus cuniculus (2)
Drosophila melanogaster (2)
Ovis aries (2)
Homo sapiens/Mus musculus xenograft (1)
Rangifer tarandus (1)
Mus musculoides (1)
Macaca mulatta (1)
unidentified (1)

Repository

biostudies-arrayexpress (1093)
ENA (318)
pride (89)
geo (34)
MetaboLights (29)
MassIVE (13)
NODE (6)
EGA (4)
iProX (3)
GPMDB (2)
BioModels (1)
GNPS (1)

Tissue

Cell culture (13)
Epithelial cell (10)
Kidney (9)
Brain (7)
Heart (6)
Testis (5)
Fibroblast (4)
Liver (4)
Endothelial cell (3)
Extracellular vesicle (3)
Kidney tubule cell (3)
Lung (3)
Pancreas (3)
Stem cell (3)
Decidua (2)
Adipose tissue (2)
Articular cartilage (2)
Articular chondrocyte (2)
Bone marrow (2)
Cartilage (2)
Chondrocyte (2)
Egg (2)
Hepatocyte (2)
Macrophage (2)
Primary cell (2)
Skin (2)
Skeletal muscle (1)
Abdominal adipose tissue (1)
Adipose dendritic cell (1)
Adipose-derived stromal cell (1)

Disease

Normal (6)
Osteoarthritis (5)
Rheumatoid arthritis (4)
Glioblastoma multiforme (3)
Disease free (3)
Infertility (3)
Obesity (2)
Not Available (2)
Aortic valve stenosis (2)
Immunoglobulin light chain amyloidosis (2)
Type 2 diabetes mellitus (2)
Cartilage disease (1)
Testicular seminoma (1)
Endometrioid carcinoma (1)
Hepatocellular carcinoma-non tumorous region (1)
Undifferentiated sarcoma (1)
Mild hyperglycemia, liver dysfunction, and renal glycosuria (1)
Thompson grade 3 (1)
Alpha-1 antitrypsin deficiency (1)
Schistosoma japonicum infection (1)
Bladder cancer (1)
Cirrhosis (1)
Colonic adenocarcinoma (1)
SS2-infected (1)
Osteosarcoma (1)
Glioblastoma (1)
Unstable atherosclerotic plaque region (1)
Breast cancer (1)
Alzheimer's disease (1)
Aortic valve insufficiency (1)

Technology Type

Mass Spectrometry (89)
Shotgun proteomics (44)
Bottom-up proteomics (24)
Mass spectrometry (21)
Data-independent acquisition (11)
Gel-based experiment (11)
Data-dependent acquisition (9)
Mass spectrometry assay (7)
Affinity purification coupled with mass spectrometry proteomics (4)
DiaPASEF (4)
All-ion fragmentation (2)
HDMSE (2)
SWATH MS (2)
NMR spectroscopy assay (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (131)
NextSeq 500 (56)
Illumina HiSeq 4000 (50)
Illumina HiSeq 2500 (37)
Illumina HiSeq 2000 (20)
NextSeq 2000 (13)
NextSeq 550 (10)
Illumina NovaSeq X (9)
10x Genomics Chromium (4)
Manual (3)
Affymetrix GeneChip Scanner 3000 7G (3)
BAS-5000 [FUJIFILM] (3)
NA (3)
DNBSEQ-G400 (3)
10x Chromium Controller (2)
AB SOLiD 5500 (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
GenePix 4000B [Axon Instruments] (2)
Illumina (2)
HiSeq X Ten (2)
Illumina HiSeq 3000 (2)
10x Genomics Chromium Controller, PCR thermocycler, Agilent 2100 Bioanalyzer with High Sensitivity DNA chip (for quality control) (1)
Water bath (for enzymatic dissociation), cell strainer (70-μm), benchtop centrifuge, automated cell counter/hemocytometer, biological safety cabinet (1)
Sterile surgical instrument set (scalpels, tissue forceps, dissection scissors), animal operating table, biological safety cabinet (1)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
Microsyringe for intraperitoneal injection (1)
Computational server/cluster, Software: R (v4.3.x), Seurat package (v5.1.0) (1)

Publication Date

2014 (111)
2013 (100)
2012 (94)
2010 (87)
2015 (83)
2026 (76)
2025 (73)
2016 (67)
2022 (63)
2011 (62)
2023 (61)
2024 (55)
2018 (47)
2020 (45)
2019 (43)
2008 (43)
2021 (41)
2009 (41)
2007 (27)
2017 (25)
2006 (11)
2005 (3)
2004 (3)

UNIPROT ID/AC

P08047 (1)
Q99650 (1)
Q6PID9 (1)
P35625 (1)
O14522 (1)
Q9Y5Y6 (1)
P60510 (1)
O43187 (1)
Q9BY84 (1)
O75173 (1)
P13725 (1)
P01583 (1)
P45452 (1)
P03956 (1)
P02458 (1)
P01033 (1)
P08254 (1)
Q15759 (1)
Q9Y4K3 (1)
P14778 (1)
P05412 (1)
P01100 (1)
O14543 (1)
P40763 (1)
P28562 (1)
P45983 (1)
P23458 (1)

ENSEMBL ID

ENSG00000100234 (1)
ENSG00000102265 (1)
ENSG00000184557 (1)
ENSG00000137745 (1)
ENSG00000196611 (1)
ENSG00000177606 (1)
ENSG00000170345 (1)
ENSG00000158859 (1)
ENSG00000149968 (1)

CHEBI ID

CHEBI:15891 (4)
CHEBI:16977 (3)
CHEBI:28875 (3)
CHEBI:15741 (3)
CHEBI:16196 (3)
CHEBI:7916 (3)
CHEBI:18183 (3)
CHEBI:17053 (3)
CHEBI:16015 (3)
CHEBI:18012 (3)
CHEBI:16919 (3)
CHEBI:16414 (3)
CHEBI:16643 (3)
CHEBI:17295 (3)
CHEBI:17351 (3)
CHEBI:170067 (2)
CHEBI:193189 (2)
CHEBI:9126 (2)
CHEBI:19144 (2)
CHEBI:28125 (2)
CHEBI:30817 (2)
CHEBI:42504 (2)
CHEBI:17169 (2)
CHEBI:16113 (2)
CHEBI:27915 (2)
CHEBI:16709 (2)
CHEBI:15978 (2)
CHEBI:16708 (2)
CHEBI:28867 (2)
CHEBI:16991 (1)

Metabolite Name

Choline (7)
Creatine (7)
Pentadecanoic acid (6)
Succinic acid (6)
Deoxycholic acid (6)
3-Hydroxybutyric acid (6)
Oleamide (6)
Adenosine (6)
Palmitic acid (6)
Oleic acid (6)
Myristic acid (6)
Cytidine (6)
L-Leucine (6)
Inosine (6)
Propionylcarnitine (5)
Lumichrome (5)
Eicosapentaenoic acid (5)
Cholesterol (5)
L-Histidine (5)
Taurine (5)
12-Hydroxydodecanoic acid (5)
Adrenic acid (5)
Arachidonic acid (5)
Sarcosine (5)
Riboflavin (5)
L-Glutamine (5)
Azelaic acid (5)
Uric acid (5)
Guanosine (5)
Thymidine (5)

First Public Date

2024 (64)
2025 (50)
2026 (40)
2023 (39)
2014 (32)
2022 (31)
2021 (16)
2019 (13)
2020 (12)
2018 (6)
2017 (5)
2016 (5)
2015 (4)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Aarhus University Department of Biomedicine Høegh-Guldbergsgade 10 DK-8000 Aarhus C (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Lomonosov Moscow State University (2)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (1)
Aarhus University Department of Biomedicine Høegh-Huldbergsgade 10 DK-8000 Aarhus C (1)
Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University (1)
Biochemistry & Molecular Biology (1)
Biochemistry and Molecular Biology, Indiana University School of Medicine (1)
Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China, (1)
Chair Quantitative Proteomics Director Proteome Center Tuebingen Interfaculty Institute for Cell Biology University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
Clinical proteomics facility, Medical Biochemistry, Academic Medical Center, University of Amstedam (1)
Department of Biochemistry, Mass Spectrometry Incubator, Virginia Polytechnic Institute and State University (1)
Department of Biological Regulation, Weizmann Institute, Rehovot, Israel. (1)
Department of Biomedical Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Department of Biotechnology St Aloysius (Deemed to be University) Mangalore – 575 003, Karnataka, India. (1)
Department of Cardiology, University Medical Center Mainz, Germany (1)
Department of Clinical Medicine, University of Tromsø 9037 Tromsø, Norway (1)
Department of Comparative Biosciences, University of Illinois at Urbana-Champaign (1)
Department of Experimental Medical Science, Medical Faculty, Lund University, Lund, Sweden (1)
Department of Experimental Pharmacology and Toxicology, Cardiovascular Research Center, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Department of Immunology and Microbiology, Shanghai Jiao Tong University School of Medicine (1)
Department of Immunology and Regenerative Biology The Weizmann Institute of Science (1)
Department of Infection Biology Institute of Infection and Global Health University of Liverpool (1)
Department of Innovative Technologies in Medicine & Dentistry, University of Chieti, Italy (1)
Department of Obstetrics and Gynecology, School of Medicine, Stanford University, CA, USA. Igenomix Foundation, Instituto de Investigación Sanitaria Hospital Clínico (INCLIVA), Valencia, Spain (1)
Department of Toxicogenomics. Maastricht University (1)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (1)
Dept of Pharmacology and Immunology Medical University of South Carolina Charleston, SC, USA (1)
Division of Endocrinology, Diabetes and Metabolism, Department of Medicine, University of Illinois Chicago, Chicago, Illinois, USA (1)

IsPrivate

False (1)

Modification

0.984 (1)
15.99491 (1)
57.02146 (1)
6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (595)
RNA-seq of coding RNA (159)
RNA-seq of coding RNA from single cells (154)
ChIP-seq (42)
Methylation profiling by array (12)
RNA-seq of total RNA (11)
Comparative genomic hybridization by array (9)
ATAC-seq (8)
Animal - High-throughput sequencing (7)
ChIP-chip by array (7)
Single nucleus RNA sequencing (7)
Transcription profiling by RT-PCR (6)
Other (6)
Baseline (5)
Human - High-throughput sequencing (5)
Methylation profiling by high throughput sequencing (5)
RNA-seq of non coding RNA (5)
Unknown experiment type (4)
ChIP-chip by tiling array (4)
DNA-seq (4)
Animal - Single-cell sequencing (3)
High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
ScATAC-seq (3)
Human - Single-cell sequencing (2)
Human - One-color microarray (2)
Transcription profiling by tiling array (2)
Spatial transcriptomics by high-throughput sequencing (2)
Bisulfite-seq (2)

Release Date

2014 (127)
2013 (109)
2015 (105)
2012 (99)
2022 (96)
2010 (92)
2016 (86)
2023 (85)
2025 (80)
2011 (74)
2021 (72)
2024 (68)
2020 (66)
2019 (60)
2017 (59)
2026 (56)
2018 (56)
2009 (44)
2008 (44)
2007 (32)
2006 (12)
2005 (3)
1999 (3)
2004 (2)
2000 (2)
1998 (2)
2003 (1)
2002 (1)
1997 (1)
1978 (1)

Previous page
1 / 204
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 204
Next page

Sort by:

Relevance

Page size

Enhancing Uterine Receptivity for Embryo Implantation through Controlled Collagenase Intervention

Ineffective endometrial matrix remodeling, a key factor in infertility, impedes embryo implantation in the uterine wall. Our study reveals the cellular and molecular impact of human collagenase-1 administration in mouse uteri, demonstrating enhanced embryo implantation rates. Collagenase-1 promotes ...

ORGANISM(S): Mus musculus (Mouse)

2024-08-13 | PXD054389 | Pride

intracellular MMP-2 proteolysis in cardiac tissue

Induced proteolysis of rat heart extracts with recombinant MMP-2 followed by subtiligase-N-terminomics

ORGANISM(S): Rattus (ncbitaxon:10114)

2023-11-01 | MSV000093229 | MassIVE

RNAseq of ipsilateral mouse brain homogenates 1 day following collagenase-induced ICH vs naive controls

PRJEB92221 | ENA

Cdc42 inhibits ERK-mediated collagenase-1 (MMP-1) expression in collagen-activated human keratinocytes.

Not available

S-EPMC3989453 | biostudies-literature

Intra-articular collagenase in the spinal facet joint induces pain, DRG neuron dysregulation and increased MMP-1 absent evidence of joint destruction.

Not available

S-EPMC7738551 | biostudies-literature

Feline leukemia virus long terminal repeat activates collagenase IV gene expression through AP-1.

Not available

S-EPMC112537 | biostudies-literature

Administration of 1-kestose to beluga reduces intestinal Turicibacter and collagenase gene levels, and blood creatinine levels.

Not available

S-EPMC11830438 | biostudies-literature

Phage display of tissue inhibitor of metalloproteinases-2 (TIMP-2): identification of selective inhibitors of collagenase-1 (metalloproteinase 1 (MMP-1)).

Not available

S-EPMC3173135 | biostudies-literature

Oral tongue cancer gene expression profiling: Identification of novel potential prognosticators

Background: The present study is aimed at identifying potential candidate genes as prognostic markers in human oral tongue squamous cell carcinoma (SCC) by large scale gene expression profiling. Methods: The gene expression profile of patients (n=37) with oral tongue SCC were analyzed using Affyme...

ORGANISM(S): Homo sapiens

2008-11-14 | E-GEOD-13601 | biostudies-arrayexpress

Collagenase IV plays an important role in regulating hair cycle by inducing VEGF, IGF-1, and TGF-β expression.

Not available

S-EPMC4590320 | biostudies-literature

Previous page
1 / 204
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 204
Next page

Sort by:

Relevance

Page size

2038 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets