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TranscriptomicsRNA-seq transcriptomics of doxorubicin (DOX) exposure in mouse colonoids (in vitro; 0, 0.1, 10 µM; 24, 48, 72 h), with raw paired-end FASTQ files
Doxorubicin (DOX) is a widely used chemotherapeutic agent that can cause off-target gastrointestinal (GI) toxicity. This experiment profiles DOX-induced transcriptomic responses by RNA-seq in mouse colonoids (in vitro) across dose and time. Mouse colonoids were sampled at 24, 48 and 72 h after expos...
ORGANISM(S): Mus musculus 
2026-02-28 | E-MTAB-16537 | biostudies-arrayexpress
GenomicsTranscriptomics analysis of iron chelator deferoxamine treated human tumor colonoids.
Transcriptomics analysis of iron chelator deferoxamine treated human tumor colonoids.
PRJNA770643 | ENA
GenomicsTransQST DOX mouse colon and colonoids RNAseq
Doxorubicin-exposed mouse colon tissue and mouse colonoids RNA-seq
PRJEB105469 | ENA
GenomicsTranscriptional response of human enteroids/colonoids on transwells to infection
Transcriptional response of human enteroids/colonoids on transwells to infection
PRJNA759635 | ENA
GenomicsRNA-Sequencing of epithelium and colonoids from patients with pediatric inflammatory bowel disease
RNA-Sequencing of epithelium and colonoids from patients with pediatric inflammatory bowel disease
PRJNA557659 | ENA
UnknownIn Vitro Polarization of Colonoids to Create an Intestinal Stem Cell Compartment.
Not available
S-EPMC4839657 | biostudies-literature
UnknownSingle Cell Analysis of Human Colonoids Exposed to Uranium-Bearing Dust.
Not available
S-EPMC11108582 | biostudies-literature
TranscriptomicsTranscriptional response of human enteroids/colonoids on transwells to infection
The goal of this study was to evaluate the transcriptional response of human enteroids/colonoids on transwells to infections (bacterial and rotavirus). Enteroids/colonoids lines C103, C109, D103, D109, I103, I109, J2 and J11 were plated on transwells coated with Matrigel, differentiated, and inocula...
ORGANISM(S): Homo sapiens 
2021-10-01 | GSE183222 | GEO
UnknownStudying the Epithelial Effects of Intestinal Inflammation In Vitro on Established Murine Colonoids.
Not available
S-EPMC10705019 | biostudies-literature
GenomicsNovel lentiviral constructs for the specification of rare and ectopic cell types in human colonoids
Novel lentiviral constructs for the specification of rare and ectopic cell types in human colonoids
PRJNA1190845 | ENA
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