Comparative proteogenomics

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Proteomics (41)
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Andropogon gerardi (34)
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cellular organisms (1)

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Tistlia consotensis USBA 355 (1)

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pride (34)
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Mass Spectrometry (34)
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UNIPROT ID/AC

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A0A087WT59 (2)
A0A087WTX5 (2)
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A0M8Q6 (2)
A0MZ66 (2)
A1A4S6 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000176092 (1)
ENSG00000247315 (1)

First Public Date

2025 (1)
2019 (1)
2013 (1)

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RNA-seq of non coding RNA from single cells (1)
RNA-seq of coding RNA (1)

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2024 (4)
2017 (4)
2018 (4)
2020 (3)
2019 (3)
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2021 (2)
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2016 (1)
2015 (1)
2014 (1)
2010 (1)

Lab affiliation

CEA-Marcoule, DSV-Li2D, 30207 Bagnols-sur-Cèze, France (5)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
1Environmental Biotechnology and Genomics Laboratory, School of the Environment, Florida A&M University, Tallahassee, FL- 32307, USA (1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)
Associate Professor in Proteomics, Head of Proteomics, Centre for Proteomic Research, University of Southampton, UK (1)
Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona 08003, Catalonia, Spain (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, South Africa (1)
Department of Chemistry Chemical Biology Institute (West Campus) Yale University (1)
Department of Oncology-Pathology, Karolinska Institutet (1)
Department of Soil Microbiology and Symbiotic Systems, Estacion Experimental del Zaidin, Granada, Spain (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany (1)
Emerging Pests and Pathogens Researh Unit Robert W. Holley Center, USDA-ARS-NEA 538 Tower Road, Ithaca, NY 14853 (1)
Erasmus MC, dept. Medical Oncology, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands (1)
Gwangju Institute of Science and Technology (GIST) (1)
Jiangxi Key Laboratory of Natural Microbial Medicine Research, College of Life Sciences, Jiangxi Science & Technology Normal University (1)
Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (1)
Novartis AG Basel (1)
Novartis Institute for BioMedical Research, Scientific Data Analysis group (1)
Professor (1)
Proteogenomics laboratory MELISA institute (1)
Proteomics Unit, Navarrabiomed-proteored (Spain) (1)
Sao Paulo State University, Department of Technology, Jaboticabal, Sao Paulo, Brazil (1)
Shisheng Sun, College of Life Science, Northwest University, 229 Taibai North Road, Life Science Building, Room 221, Xi’an, Shaanxi Province 710069, P.R. China. Phone: +86-029-88302411 (1)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (1)
Technical University of Munich (1)
The Gade Research Group for Infection and Immunity, Department of Clinical Science, University of Bergen, Norway (1)
US Army Edgewood Chemical Biological Center, Research and Technology Directorate, Aberdeen Proving Ground, MD, USA (1)

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Integrative proteogenomics for differential expression and splicing variation in a DM1 mouse model

Here, we performed a large-scale coordinated transcriptomic and proteomic analysis to characterize a DM1 mouse model (HSALR) in comparison to wild-type. Our integrative proteogenomics approach comprised gene- and splicing-level assessments for mRNA and protein. It recapitulated many known instances ...

ORGANISM(S): Mus musculus (Mouse)

2024-01-26 | PXD025589 | Pride

Proteogenomics of Parhyale hawaiensis ovaries

Proteogenomics of Parhyale hawaiensis ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

ORGANISM(S): Parhyale hawaiensis

2015-09-21 | PXD002310 | Pride

Shotgun proteomics yolk proteins female reproductive organ conserved proteins

Proteogenomics of Gammarus roeseli ovaries

Proteogenomics of Gammarus roeseli ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

ORGANISM(S): Gammarus roeselii

2015-09-21 | PXD002311 | Pride

Shotgun proteomics yolk proteins female reproductive organ conserved proteins

Proteogenomics of Gammarus pulex ovaries

Proteogenomics of Gammarus pulex ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

ORGANISM(S): Gammarus pulex

2015-09-21 | PXD002309 | Pride

Shotgun proteomics yolk proteins female reproductive organ conserved proteins

Proteogenomics of Hyalella azteca ovaries

Proteogenomics of Hyalella azteca ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

ORGANISM(S): Hyalella azteca (Amphipod)

2015-09-21 | PXD002308 | Pride

Shotgun proteomics yolk proteins female reproductive organ conserved proteins

Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model.

Not available

S-EPMC10770608 | biostudies-literature

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis.

Not available

S-EPMC5389616 | biostudies-literature

Comparative proteome analysis of the dish pathogen Renibacterium salmoninarum grown under rich- and iron‐limited conditions

Proteomic analysis of iron restriction of the marine pathogen Renibacterium salmoninarum that causes the disease (BKD), in this study two isolated Chilean H-2 strains and the type strain ATCC33209 have been used. These results show that changes are generated at the level of protein expression in pat...

ORGANISM(S): Renibacterium salmoninarum ATCC 33209

2021-11-29 | PXD024459 | Pride

Fish disease Bkd Lfq Iron

Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics.

Not available

S-EPMC7702098 | biostudies-literature

Tistlia consotensis USBA 355

Tistlia consotensis Proteogenomics

PRJNA196967 | ENA

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77 Results

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