Compass - OmicsDI

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Unknown (1169)
Genomics (392)
Proteomics (212)
Transcriptomics (131)
Metabolomics (30)
Other (14)
Methylation profiling (3)
Genomic (1)
Clinical (1)

Organisms

Chlamydomonas reinhardtii (200)
Marchantia polymorpha subsp. ruderalis (200)
Methylocystis sp. (200)
Bothrops insularis (200)
Bothrops jararaca (200)
Bothrops jararacussu (200)
Bothrops cotiara (200)
Streptomyces coelicolor (200)
Burkholderia ubonensis MSMB22 (200)
Pseudomonas aeruginosa PA103 (200)
Artibeus jamaicensis (200)
Mus musculus (129)
Homo sapiens (67)
Saccharomyces cerevisiae (28)
Arabidopsis thaliana (18)
Caenorhabditis elegans (17)
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Drosophila melanogaster (11)
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Monascus purpureus (1)
Paeonia suffruticosa (1)
Populus trichocarpa (1)
Saccharomyces cerevisiae W303 (1)

Organisms

Mus musculus (102)
Homo sapiens (45)
Saccharomyces cerevisiae (17)
Arabidopsis thaliana (17)
Caenorhabditis elegans (11)
Schizosaccharomyces pombe (9)
Drosophila melanogaster (7)
Aspergillus flavus (2)
Saccharomyces cerevisiae BY4741 (2)
Marchantia polymorpha (2)
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aquatic metagenome (1)
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air metagenome (1)
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Populus trichocarpa (1)

Repository

ENA (262)
geo (232)
pride (200)
biostudies-arrayexpress (39)
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iProX (2)
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Tissue

Cell culture (45)
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Blood (8)
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T cell (5)
Mucosal invariant T cell (4)
Whole body (4)
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Plant cell (3)
Blood serum (3)
Heart (3)
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Monocyte (3)
HepG2 cell (2)
Trophoblast cell (2)
Tear (2)
Breast epithelium (2)
Pancreas (2)
HEK-293T cell (2)
Cerebellum (2)
Melanocyte (2)
Embryonic stem cell (2)
Extracellular vesicle (2)
Skin (2)
Macrophage (2)

Disease

Breast cancer (6)
Disease free (4)
COVID-19 (3)
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Plasmodium falciparum malaria (2)
Chagas disease (2)
Rheumatoid arthritis (2)
Acute leukemia (2)
Colorectal Neoplasms (1)
Fever (1)
Postural orthostatic tachycardia syndrome (1)
Barrett's esophagus (1)
Placenta disease (1)
Chronic bronchitis (1)
Skin melanoma (1)
Dengue disease (1)
Bordetella parapertussis whooping cough (1)
Thrombocytopenia (1)
Zika virus congenital syndrome (1)
Mixed disorder as reaction to stress (1)
Multiple myeloma (1)
Pancreatic ductal adenocarcinoma (1)
Cervix carcinoma (1)
Melanoma (1)
Cardiovascular system disease (1)
Parkinson's disease (1)
Periodontitis (1)
Sjogren's Syndrome (1)
Malaria (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (200)
Shotgun proteomics (85)
Bottom-up proteomics (49)
Data-dependent acquisition (30)
Mass spectrometry (28)
Affinity purification coupled with mass spectrometry proteomics (24)
Data-independent acquisition (18)
Gel-based experiment (18)
Top-down proteomics (7)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Mass spectrometry assay (2)
All-ion fragmentation (2)
DiaPASEF (2)
Metaproteomics (1)
Affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
Liquid Chromatography MS - negative - reverse phase (9)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 2500 (2)
UltrafleXtreme MALDI-TOF MS (Bruker) (2)
Liquid Chromatography MS - negative - hilic (2)
Agilent Technologies G2505B scanner (1)
Illumina HiSeq 2000 (1)
Unspecified (1)
MaXis II (1)
Impact (1)
Impact HD (1)
Orbitrap Fusion (1)
Q Exactive (1)
MicrOTOF-Q I ESI-Qq-TOF (Bruker) (1)
MaXis (Bruker) (1)
Liquid Chromatography MS - (1)
MS Imaging - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2026 (76)
2025 (69)
2023 (65)
2024 (57)
2019 (40)
2022 (39)
2021 (30)
2018 (25)
2020 (23)
2014 (15)
2017 (14)
2016 (13)
2015 (12)
2011 (12)
2013 (9)
2009 (7)
2012 (4)
2010 (2)
2008 (1)

CHEBI ID

CHEBI:17295 (4)
CHEBI:64563 (3)
CHEBI:17015 (3)
CHEBI:18186 (3)
CHEBI:16603 (2)
CHEBI:18048 (2)
CHEBI:50202 (2)
CHEBI:16065 (2)
CHEBI:16562 (2)
CHEBI:17312 (2)
CHEBI:77131 (2)
CHEBI:18344 (2)
CHEBI:16546 (2)
CHEBI:15929 (2)
CHEBI:28790 (2)
CHEBI:16551 (2)
CHEBI:16828 (2)
CHEBI:15603 (2)
CHEBI:46961 (2)
CHEBI:74475 (2)
CHEBI:116314 (2)
CHEBI:109895 (2)
CHEBI:27911 (2)
CHEBI:30913 (2)
CHEBI:16015 (2)
CHEBI:17385 (2)
CHEBI:28197 (2)
CHEBI:17509 (2)
CHEBI:36313 (2)
CHEBI:15354 (2)

Metabolite Name

Oleamide (5)
Tyrosine (4)
Isoleucine (3)
L-Phenylalanine (3)
2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) (2)
Cadalene (2)
Oleoyl Ethanolamide (2)
Indoline (2)
3,5-Di-tert-butylsalicylaldehyde (2)
Narcissin (2)
Gamma-Glu-leu (2)
Oleoyl Ethyl Amide (2)
Compactin diol lactone (2)
LPC(18:3) (2)
LPC(16:1) (2)
LPC(14:0) (2)
Germacrone (2)
1-Palmitoyl-sn-glycero-3-phosphocholine (2)
Tricin (2)
Phthalic anhydride (2)
Pentaethylene glycol (2)
Palmitamide (2)
Hexaethylene glycol (2)
Erucamide (2)
Asn-Pro-Lys (2)
N1-Acetylspermidine (2)
N1,N12-Diacetylspermine (2)
Phytosphingosine (2)
Indole (2)
Linoleic Acid (2)

First Public Date

2023 (43)
2026 (37)
2024 (32)
2025 (24)
2019 (22)
2022 (20)
2020 (16)
2014 (15)
2021 (14)
2018 (12)
2017 (9)
2013 (7)
2015 (6)
2016 (5)

Classification

fungi (3)

Modification

N6 (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (11)
ChIP-seq (10)
Other (6)
RNA-seq of coding RNA (4)
ChIP-chip by tiling array (3)
ChIP-chip by array (3)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Observational (1)

Release Date

2025 (161)
2024 (151)
2023 (138)
2022 (137)
2021 (110)
2020 (84)
2019 (71)
2018 (63)
2017 (53)
2015 (37)
2016 (35)
2014 (33)
2012 (23)
2026 (22)
2013 (19)
2010 (19)
2011 (17)
2009 (14)
2008 (6)
2007 (3)
2005 (3)
2004 (3)
2006 (2)
2003 (2)
2002 (1)
2000 (1)

Lab affiliation

Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Department of Molecular Biology and Genetics, Lab of Proteome Research, Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow, 119992, Russia (3)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (3)
Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (3)
WEHI (3)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (3)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (2)
Professor Emeritus Department of Chemistry The University of Texas at San Antonio Effective July 1, 2026: Johnson Foundation Professor of Chemical Enzymology Department of Biochemistry and Biophysics, Perelman School of Medicine Department of Chemistry, School of Arts and Sciences University of Pennsylvania, Philadelphia, PA 19104 (2)
State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen, Fujian, China (2)
Marseille Protéomique Centre de Recherche en Cancérologie de Marseille Institut Paoli Calmettes - Inserm U1068 - CNRS UMR7258 - Aix Marseille Université UM105 27, Bd Leï Roure, BP30059, 13273 Marseille Cedex 9, France (2)
Deputy Director – Science Strategy The Walter and Eliza Hall institute of Medical Research Professor, Department of Medical Biology Faculty of Medicine, Dentistry and Health The University of Melbourne Australia (2)
Department of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, Sweden (2)
Institute of Microbiology, Czech Academy of Science, v.v.i. (2)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, france (2)
Chemical and Biological Engineering, Hong Kong University of Science and Technology (HKUST) (2)
Hochschule Anhalt Fachbereich 7 - Angewandte Biowissenschaften und Prozesstechnik (BWP) Bernburger Straße 55 06366 Köthen Germany (2)
Ph.D., Professor, Vice Dean (2)
Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (2)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (2)
Columbia University, Dept. Biochemistry/Mol. Biophysics (2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
EDyP (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
University Regensburg Biochemistry I Mass Spectrometry group (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
Professor, Centre for Microbiome Research, Queensland University of Technology | Translational Research Institute (1)
Walter and Elisa Hall Institute of Medical Research Inflammation Division (1)
Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboud Institute for Molecular Life Sciences, Radboud university medical center, Nijmegen, The Netherlands (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Radboud University Nijmegen (1)

Location

United States (1)

Keyword

Screening Modality (1)
SDNA-FIT (1)
CRC Screening (1)
FIT (1)
Cologuard (1)
Survey (1)
Video (1)
Colonoscopy (1)

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Context Dependency of Set1/COMPASS Mediated H3 Lysine 4 Trimethylation

The stimulation of trimethylation of histone H3 lysine 4 (H3K4) by H2B monoubiquitination (H2Bub) has been widely studied with multiple mechanisms proposed for this form of histone crosstalk. Cps35/Swd2 within COMPASS is considered to bridge these processes. However, a truncated form of Set1 (762-Se...

ORGANISM(S): Saccharomyces cerevisiae

2014-01-09 | E-GEOD-53241 | biostudies-arrayexpress

The MLL3/MLL4 branch of the COMPASS family regulates H3K4 monomethylation at enhancers

Histone H3 lysine 4 (H3K4) can be mono-, di-, and trimethylated by members of the COMPASS (COMplex of Proteins ASsociated with Set1) family from yeast to human and these modifications can be found at distinct regions of the genome. Monomethylation of histone H3K4 (H3K4me1) is relatively more enriche...

ORGANISM(S): Homo sapiens

2013-09-30 | E-GEOD-51176 | biostudies-arrayexpress

Mass spectrometry-based characterization of SET1/COMPASS complex in Caenorhabditis elegans

Changes in histone post-translational modifications are associated with aging through poorly defined mechanisms. Histone 3 lysine 4 (H3K4) methylation at promoters is deposited by SET1 family methyltransferases acting within conserved multiprotein complexes known as COMPASS. Using co-immunopurificat...

ORGANISM(S): Caenorhabditis elegans

2021-12-08 | PXD029904 | Pride

Transcription profiling by array of fission yeast mutants of the Set1/Compass complex under steady-state and dynamic conditions to analyze the role of histone 3 lysine 4 methylation in transcription

Genome-wide analysis of the role of Histone 3 lysine 4 methylation in S. cerevisiae transcription by analyzing different mutants of the Set1/Compass complex, under steady-state and dynamic conditions

ORGANISM(S): Saccharomyces cerevisiae

2011-02-18 | E-TABM-486 | biostudies-arrayexpress

Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans

The CFP1 CXXC zinc finger protein targets the SET1/COMPASS complex to nonmethylated CpG rich promoters to implement tri-methylation of histone H3 Lys4 (H3K4me3). Although H3K4me3 is widely associated with gene expression, the effects of CFP1 loss vary, suggesting additional chromatin factors contrib...

ORGANISM(S): Caenorhabditis elegans

2019-09-27 | PXD015548 | Pride

Chromatin Set1/compass complex C. elegans Interactomics

C-COMPASS: A user-friendly neural network tool profiles cell compartments at protein and lipid levels

Systematic proteomic organelle profiling methods including Protein Correlation Profiling and LOPIT have advanced our understanding of cellular compartmentalization. To manage the complexity of organelle profiling data, we introduce C-COMPASS, a user-friendly open-source software that employs a neura...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2025-07-18 | PXD056457 | Pride

Organelle proteomics

Characterisation of COMPASS activity in ageing yeast

PRJNA421268 | ENA

TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS

TET proteins convert 5-methylcytosine to 5-hydroxymethylcytosine, an emerging dynamic epigenetic state of DNA that can influence transcription. Evidence has linked TET1 function to epigenetic repression complexes, yet mechanistic information, especially for the TET2 and TET3 proteins, remains limite...

ORGANISM(S): Mus musculus

2013-02-07 | E-GEOD-36620 | biostudies-arrayexpress

COMPASS-degron cells

PRJNA753080 | ENA

COMPASS-CP: An Electronic Application to Capture Patient-Reported Outcomes to Develop Actionable Stroke and Transient Ischemic Attack Care Plans.

Not available

S-EPMC9155209 | biostudies-literature

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