Connolly C C - OmicsDI

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Unknown (869)
Metabolomics (40)
Transcriptomics (39)
Proteomics (17)
Genomics (5)

Organisms

Homo sapiens (27)
Mus musculus (11)
Zea mays (4)
Fusarium fujikuroi (3)
Rattus norvegicus (2)
Pomacentrus moluccensis (1)
Pseudomonas synxantha (1)
Fusarium graminearum (1)
Sus scrofa (1)
Arabidopsis thaliana (1)
Caenorhabditis elegans (1)
Medicago truncatula (1)
Medicago tuberculata (1)
Pseudomonas aeruginosa PAO1H2O (1)
Schizosaccharomyces pombe 927 (1)
Sus scrofa domesticus (1)

Repository

biostudies-arrayexpress (43)
MetaboLights (40)
pride (16)
EGA (1)
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Tissue

Embryo (1)
Leaf (1)
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Disease

Systemic sclerosis with diffuse scleroderma (1)
Normal (1)
Amyotrophic lateral sclerosis (1)
Malignant neoplasm of ovary (1)
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Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass spectrometry (35)
Mass Spectrometry (16)
Shotgun proteomics (9)
Mass spectrometry assay (5)
Bottom-up proteomics (2)
Data-independent acquisition (2)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (13)
Liquid Chromatography MS - positive - reverse phase (12)
TSQ Vantage (Thermo Scientific) (8)
Liquid Chromatography MS - alternating - reverse phase (5)
Thermo Scientific LTQ FT Ultra (5)
Liquid Chromatography MS - positive - hilic (3)
7T LTQ FT Ultra, Thermo Fisher Scientific (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - hilic (2)
MS Imaging - (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina NovaSeq X (1)
Illumina HiSeq 4000 (1)
6540 Q-TOF LC/MS (Agilent) (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Gas Chromatography MS - positive (1)
LTQ FT Ultra (Thermo Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS – negative - hilic (1)
Liquid Chromatography MS – positive - reverse phase (1)
MaXis (Bruker) (1)

Publication Date

2023 (10)
2016 (8)
2022 (8)
2015 (6)
2014 (6)
2013 (6)
2011 (6)
2010 (6)
2021 (5)
2024 (5)
2026 (4)
2012 (4)
2025 (4)
2017 (4)
2009 (3)
2008 (3)
2006 (2)
2005 (2)
2018 (2)
2020 (2)
2019 (2)
2007 (1)

CHEBI ID

CHEBI:28044 (13)
CHEBI:15741 (12)
CHEBI:17596 (12)
CHEBI:16335 (11)
CHEBI:27897 (11)
CHEBI:30769 (11)
CHEBI:15354 (10)
CHEBI:16708 (10)
CHEBI:16750 (10)
CHEBI:22660 (10)
CHEBI:26271 (10)
CHEBI:28300 (10)
CHEBI:29016 (10)
CHEBI:16027 (9)
CHEBI:16235 (9)
CHEBI:16865 (9)
CHEBI:17015 (9)
CHEBI:17202 (9)
CHEBI:17533 (9)
CHEBI:30763 (9)
CHEBI:7916 (9)
CHEBI:15956 (8)
CHEBI:16411 (8)
CHEBI:16457 (8)
CHEBI:16811 (8)
CHEBI:17509 (8)
CHEBI:17712 (8)
CHEBI:17750 (8)
CHEBI:18211 (8)
CHEBI:18237 (8)

Metabolite Name

Tryptophan (7)
Guanosine (6)
Phenylalanine (6)
Xanthine (6)
Adenine (5)
Adenosine (5)
Arginine (5)
Chitotriose (5)
Choline (5)
Glutamine (5)
Guanine (5)
Inosine (5)
Isoleucine (5)
Kynurenine (5)
Leucine (5)
Ornithine (5)
Proline (5)
Aspartic acid (4)
Citrulline (4)
Methionine (4)
Riboflavin (4)
Serine (4)
Tyrosine (4)
Uracil (4)
Xanthosine (4)
2,3-dihydroxypropane-1-sulfonate (3)
4-aminobenzoic acid (3)
4-hydroxybenzoic acid (3)
Adenine (3)
Citric acid (3)

Modification

Not available (2)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (6)
ChIP-seq (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (99)
2022 (98)
2023 (92)
2020 (92)
2025 (89)
2024 (85)
2019 (51)
2018 (43)
2016 (36)
2014 (35)
2015 (31)
2017 (31)
2013 (22)
2012 (18)
2009 (18)
2010 (17)
2026 (16)
2011 (16)
2008 (8)
2007 (4)
2005 (4)
2006 (2)
2000 (2)
2004 (1)
2002 (1)
1999 (1)

Lab affiliation

Plant Biology (2)
School of Integrative Plant Science Plant Biology Section, Cornell University (2)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
ANU, RSB (1)
Australian National University, ACT, Australia (1)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Children's Medical Research Institute, Faculty of Medicine and Health, Westmead, NSW, Australia (1)
Department of Medicine, Division of Endocrinology, University of Arizona College of Medicine (1)
Lab Head, Department of Biochemistry and Pharmacology, The University of Melbourne (1)
RNA Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Wilmslow Road, Manchester M20 4BX, United Kingdom. (1)
Section of Experimental Biomedicine, Norwegian University of Life Sciences, Oslo, Norway (1)
Ulster University, Northern Ireland Center for Stratified Medicine (1)
University of Aberdeen School of Medicine, Medical Sciences and Nutrition Institute of Medical Sciences Foresterhill Aberdeen AB25 2ZD Scotland, United Kingdom (1)
University of California San Diego (1)

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Expression of survivin in lung eosinophils is associated with pathology in a mouse model of allergic asthma 1

Humans vary markedly in their propensity to develop asthma, despite often being exposed to similar environmental stimuli. Similarly, mouse strains vary in susceptibility to airways pathology in experimental asthma. Sensitization and aerosol challenge with ovalbumin (OVA) induces eosinophil accumulat...

ORGANISM(S): Mus musculus

2010-05-18 | E-GEOD-15345 | biostudies-arrayexpress

Expression of survivin in lung eosinophils is associated with pathology in a mouse model of allergic asthma 2

ORGANISM(S): Mus musculus

2010-05-18 | E-GEOD-15414 | biostudies-arrayexpress

Evidence of altered fatty acid metabolism in dogs with naturally occurring valvular heart disease and congestive heart failure

INTRODUCTION: Myxomatous mitral valve disease (MMVD) is the most common cardiac condition in adult dogs. The disease progresses over several years and affected dogs may develop congestive heart failure (HF). Research has shown that myocardial metabolism is altered in cardiac dise...

2022-03-31 | MTBLS716 | MetaboLights

The APSES Transcription factor Efg1 regulates a novel phenotype switch in Candida parapsilosis [ChIP-seq].

We use ChIP-seq to identify the targets of Efg1 in Candida parapsilosis. We show that Efg1 binds to 502 promoter regions, including 70 potential transcription factors or regulatory proteins. Several of the transcription factors belong to networks that regulate biofilm development and white-opaque sw...

ORGANISM(S): Candida parapsilosis

2013-06-20 | E-GEOD-41063 | biostudies-arrayexpress

The APSES Transcription factor Efg1 regulates a novel phenotype switch in Candida parapsilosis [RNA-seq].

In Candida albicans the Efg1 transcription factor (a member of the APSES family) is an important regulator of hyphal growth, and of the white-to-opaque transition. In contrast, we show that the Efg1 ortholog in Candida parapsilosis is a major regulator of a different morphological switch at the colo...

ORGANISM(S): Candida parapsilosis

2013-06-20 | E-GEOD-41064 | biostudies-arrayexpress

Optical Analysis of the Internal Void Structure in Polymer Membranes for Gas Separation.

Not available

S-EPMC7694385 | biostudies-literature

Cystatin C and α-1-Microglobulin Predict Severe Acute Kidney Injury in Patients with Hemorrhagic Fever with Renal Syndrome.

Not available

S-EPMC7460112 | biostudies-literature

Pseudomonas sp. Strain 273 Incorporates Organofluorine into the Lipid Bilayer during Growth with Fluorinated Alkanes

Anthropogenic organofluorine compounds are recalcitrant, globally distributed, and a human health concern. Although rare, natural processes synthesize fluorinated compounds, and some bacteria have evolved mechanisms to metabolize organofluorine compounds. Pseudomonas sp. strain 273 grows with...

2022-06-06 | MTBLS3893 | MetaboLights

Extreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

Harmful algal blooms (HABs) of the toxic haptophyte Prymnesium parvum are a recurrent problem in many inland and estuarine waters around the world. Strains of P. parvum vary in the toxins they produce and in other physiological traits associated with HABs, but the genetic basis ...

2023-04-26 | MTBLS5893 | MetaboLights

Expression of survivin in lung eosinophils is associated with pathology in a mouse model of allergic asthma

This SuperSeries is composed of the following subset Series: GSE15345: Expression of survivin in lung eosinophils is associated with pathology in a mouse model of allergic asthma 1 GSE15414: Expression of survivin in lung eosinophils is associated with pathology in a mouse model of allergic asthma 2...

ORGANISM(S): Mus musculus

2010-05-18 | E-GEOD-15429 | biostudies-arrayexpress

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