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TranscriptomicsRNAtag-Seq data generated from 22 host-relevant conditions in Campylobacter jejuni
RNAtag-Seq were used to investigate the transcriptomic landscape of C. jejuni under 22 growth and stress conditions, with 3 replicates from each condition. 5 extra repeats were created to replaces low-quality samples.
ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 
2022-05-27 | E-MTAB-11309 | biostudies-arrayexpress
TranscriptomicsCappable-seq data for discovering condition-specific primary transcriptome in Campylobacter jejuni
The transcription start sites of the Campylobacter jejuni genome was identified by Cappable-seq, which captures primary transcripts by capping the 5´ triphosphorylated end
ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 
2022-05-27 | E-MTAB-11308 | biostudies-arrayexpress
TranscriptomicsLer regulation in EPEC
Transcriptional profiling of wt and ler- EPEC and O157 E. coli strains at mid log and early stationary growth phases wt vs. Ler- at OD 0.3 and 0.9. Biological replicates: 4 independently grown. Four replicates per array.
ORGANISM(S): Escherichia coli O157:H7 str. EDL933 
2013-03-31 | E-GEOD-38876 | biostudies-arrayexpress
TranscriptomicsThe expression profile of Escherichia coli K-12 in response to minimal, optimal and excess copper concentrations
The gene expression profile of E. coli K-12 MG1655 grown in minimal medium supplemented with elevated copper concentrations (as copper-glycine) has been analysed using whole genome oligonucleotide microarrays. â??Poolâ?? RNA was isolated from five independently grown 50ml DMA cultures of E. coli K-...
ORGANISM(S): Escherichia coli 
2010-06-05 | E-GEOD-1780 | biostudies-arrayexpress
TranscriptomicsCaveat Mutator
The use of whole genome microarrays for monitoring mutagenised or otherwise engineered genetic derivatives is a potentially powerful tool for checking genomic integrity. Using comparative genomic hybridization of a number of unrelated, directed deletion mutants in Escherichia coli K-12 MG1655 we ide...
ORGANISM(S): Escherichia coli 
2007-09-30 | E-GEOD-7695 | biostudies-arrayexpress
TranscriptomicsMelR experiment 1
Three independent repeats of the same experiment, comparing gene expression in E. coli cultures expressing either no MelR, or a constitutively active MelR* protein.
ORGANISM(S): Escherichia coli 
2010-06-06 | E-GEOD-1421 | biostudies-arrayexpress
TranscriptomicsA reassesment of the FNR regulon and the effects of nitrate,nitrite, narXL and narQP
The fumarate and nitrate reductase regulator protein, FNR, is a global transcription factor that regulates major biochemical changes as Escherichia coli adapts from aerobic to anaerobic growth. The ability of an fnr mutant to grow anaerobically in the presence of trimethylamine-N-oxide (TMAO) as th...
ORGANISM(S): Escherichia coli 
2005-11-21 | E-GEOD-3591 | biostudies-arrayexpress
TranscriptomicsThe transcriptomic response of E. coli to triclosan exposure
The gene expression profile of E. coli K-12 MG1655 grown in minimal medium treated with 0.12 mg/L of the biocide triclosan has been analysed using whole genome oligonucleotide microarrays. "Control" RNA was isolated from three independently grown 50ml MOPS minimal media cultures of E. coli K-12 MG16...
ORGANISM(S): Escherichia coli 
2010-10-08 | E-GEOD-15059 | biostudies-arrayexpress
TranscriptomicsThe role of multi-copper oxidase CueO
The effect of a cueO mutation on global gene expression in E. coli has been analysed using whole genome oligonucleotide microarrays. A cueO mutant lacks a periplasmic multi-copper oxidase, an enzyme that is believed to be involved in the oxidation of cuprous and ferrous ions as well as phenolic comp...
ORGANISM(S): Escherichia coli 
2010-07-01 | E-GEOD-5177 | biostudies-arrayexpress
ModelsCarter2023 - Genome-scale metabolic model of Photorhabdus asymbiotica.
Photorhabdus asymbiotica is an emerging human pathogen shown to display a dramatic metabolic shift when growing at a temperature associated with mammalian body temperature compared to the temperature of an insect, its typical host. This genome-scale metabolic model is one the first steps to investig...
2024-08-02 | MODEL2309110001 | BioModels
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