Cord blood - OmicsDI

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Unknown (5516)
Genomics (1540)
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Genomic (7)
Clinical (6)

Organisms

Homo sapiens (1506)
Mus musculus (178)
Rattus norvegicus (42)
Drosophila melanogaster (11)
Sus scrofa (5)
Candida albicans (4)
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synthetic construct (2)
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Cucumis sativus var. sativus (1)
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human blood metagenome (1)

Organisms

Homo sapiens (999)
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human gut metagenome (3)
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feces metagenome (1)
human metagenome (1)
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Repository

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biostudies-arrayexpress (879)
geo (799)
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pride (74)
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jPOST (2)
EVA (1)
PeptideAtlas (1)

Tissue

Blood (23)
Brain (10)
Ovary (8)
Liver (8)
Kidney (8)
Cord blood (6)
Skin (6)
Prostate gland (6)
Lung (6)
Bone marrow (5)
Esophagus (5)
Pancreas (5)
Breast (4)
Stomach (4)
Uterus (4)
Thyroid gland (4)
Uterine cervix (3)
Peripheral blood (2)
Pylorus (1)
Synovial membrane of synovial joint (1)
Subthalamic nucleus (1)
Body of tongue (1)
Myometrium (1)
Dorsal root ganglion (1)
Set of muscles of vertebral column (1)
Pharyngeal mucosa (1)
Vena cava (1)
Mammalian vulva (1)
Urethra (1)
Medulla of organ (1)

Disease

Hepatocellular carcinoma (2)
Melanoma (2)
Adenocarcinoma (1)
Adenomyosis (1)
Uterine fibroid (1)
Neuromuscular pain (1)
Endometriosis (1)
Normal - esophagus muscularis mucosa (GTEx) (1)
Normal - uterus (GTEx) (1)
Normal - adjacent to lung adenocarcinoma (1)
Normal - suprapubic skin (GTEx) (1)
Normal - adjacent to prostate adenocarcinoma (1)
Normal - adjacent to head and neck squamous cell carcinoma (1)
Normal - urinary bladder (GTEx) (1)
Normal - C1 segment of cervical spinal cord (GTEx) (1)
Normal - adjacent to squamous cell lung carcinoma (1)
Normal - prostate gland (GTEx) (1)
Normal - breast (GTEx) (1)
Normal - nucleus accumbens (GTEx) (1)
Normal - adjacent to breast adenocarcinoma (1)
Normal - cerebral cortex (GTEx) (1)
Normal - adjacent to bladder transitional cell carcinoma (1)
Normal - blood (GTEx) (1)
Normal - cerebellar hemisphere (GTEx) (1)
Normal - hippocampus proper (GTEx) (1)
Normal - cortex of kidney (GTEx) (1)
Normal - lung (GTEx) (1)
Normal - esophagus mucosa (GTEx) (1)
Normal - adjacent to follicular thyroid carcinoma (1)
Normal - endocervix (GTEx) (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (48)
Mass spectrometry (20)
Bottom-up proteomics (14)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (4)
ESI (4)
Data-independent acquisition (4)
SRM/MRM (4)
Gel-based experiment (3)
ILLUMINA, Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
SWATH MS (2)
Data-dependent acquisition (2)
Top-down proteomics (2)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Illumina Genome Analyzer II, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina 450K, Bisulfite-Seq (1)
Illumina 450K-chip (methylation data) (1)
Illumina 450k (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
NMR (1)
EI (1)
SomaScan affinity proteomics (1)
Affinity proteomics (1)
DiaPASEF (1)

Instrument Platform

NextSeq 500 (14)
Illumina NovaSeq 6000 (12)
Illumina HiSeq 2000 (9)
Illumina HiSeq 2500 (8)
Illumina HiSeq 4000 (6)
NextSeq 550 (5)
Illumina HiSeq 3000 (3)
Agilent Microarray Scanner G2505C (2)
Agilent Hybridisation Oven G2545A (2)
Agilent Micro Array Scanner G2565CA (2)
Instrument (2)
BD Influx Cell Sorter (1)
ProFlex PCR system (1)
Microcentrifuge (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
PC (1)
SMARTerTM Ultra Low RNA Kit (1)
Applied Biosystems (1)
None (1)
Centrifuge (1)
ScanArray scanning hardware (1)
Affymetrix GeneChip Scanner 3000 (1)
GenePix 4000A [Axon Instruments] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
R (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
- (1)

Publication Date

2014 (146)
2010 (128)
2012 (126)
2015 (123)
2013 (118)
2025 (109)
2022 (101)
2011 (100)
2016 (97)
2021 (91)
2020 (87)
2023 (79)
2026 (78)
2024 (72)
2008 (72)
2017 (63)
2019 (62)
2018 (57)
2009 (52)
2007 (42)
2005 (14)
2006 (8)
2004 (7)
2002 (2)

UNIPROT ID/AC

Q92911 (1)
Q86UN2 (1)
Q86TY3 (1)
Q6ZMI3 (1)
M0QZL2 (1)
Q6UW01 (1)
P55291 (1)
Q96PX8 (1)
Q8IZP7 (1)
O75711 (1)
Q9UBX8 (1)
O95390 (1)
Q99935 (1)
O15466 (1)
Q9BZ76 (1)
A6NLU5 (1)
Q86Y38 (1)
Q9BXJ1 (1)
P16519 (1)
Q8TAG5-2 (1)
Q8TAG5 (1)
Q6NW40 (1)
H7C3J4 (1)
Q9H2X0 (1)
Q9BXJ0 (1)
Q8NES3 (1)
Q8IUK8 (1)
Q7LFX5 (1)
Q53RD9 (1)
O95841 (1)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:16811 (9)
CHEBI:15428 (9)
CHEBI:27897 (8)
CHEBI:28044 (7)
CHEBI:16737 (7)
CHEBI:16919 (7)
CHEBI:22652 (6)
CHEBI:27266 (6)
CHEBI:28300 (6)
CHEBI:16449 (6)
CHEBI:22660 (6)
CHEBI:18186 (6)
CHEBI:17822 (6)
CHEBI:18237 (6)
CHEBI:17154 (6)
CHEBI:17568 (6)
CHEBI:15741 (6)
CHEBI:15891 (6)
CHEBI:17368 (6)
CHEBI:30769 (6)
CHEBI:16000 (5)
CHEBI:16870 (5)
CHEBI:25017 (5)
CHEBI:24898 (5)
CHEBI:26986 (5)
CHEBI:16113 (5)
CHEBI:32816 (5)
CHEBI:30915 (5)
CHEBI:16856 (5)
CHEBI:15422 (5)

Metabolite Name

Creatine (8)
Taurine (7)
Hypoxanthine (7)
Inosine (7)
Creatinine (6)
Tryptophan (6)
Xanthine (6)
Uridine (6)
5-Hydroxy-L-tryptophan (5)
Uracil (5)
Glycine (5)
L-Histidine (5)
Methionine (5)
Choline (5)
Xanthosine (5)
L-Tyrosine (5)
Adenine (5)
L-Phenylalanine (5)
L-Serine (5)
Maleic Acid (4)
GTP (4)
SM(d18:1/24:0) (4)
N-Acetylglycine (4)
Hydroxyphenyllactic acid (4)
ATP (4)
Acetaminophen (4)
Glycerol (4)
Valine (4)
Niacinamide (4)
D-Glucose (4)

First Public Date

2014 (208)
2024 (184)
2022 (123)
2026 (122)
2025 (113)
2021 (98)
2020 (95)
2023 (90)
2019 (77)
2017 (61)
2018 (54)
2015 (41)
2016 (26)
2013 (15)

Study status

Completed (2)
Recruiting (2)
Withdrawn (1)
Not yet recruiting (1)

Lab affiliation

Department of Neurology, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany (3)
Inserm, U1016, Institut Cochin, Paris, France Cnrs, UMR8104, Paris, France Plateforme Proteomique 3P5, Université Paris Descartes, Sorbonne Paris Cité, France. (3)
Keele University (2)
Director at Max Planck Institute of Biochemistry Department Proteomics und Signaltransduktion Am Klopferspitz 18, 82152 Martinsried (2)
All India Institute of Medical Sciences, New Delhi, India (2)
Turku Bioscience, University of Turku and Åbo Akademi University, Turku, Finland (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
Hellenic Cord Blood Bank, Biomedical Research Foundation Academy of Athens, Greece (1)
Jun Jim Zhangjunjimzhang@sjtu.edu.cnMinistry of Education-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine (1)
Center for Regeneration and Aging,BGI-haangzhou (1)
Department of Clinical Science (IKVL), Lund Division of Infection Medicine Lund University Sweden (1)
Division of Obstetrics and Gynecology, Department of Clinical Sciences Lund, Lund University, Lund, Sweden (1)
Physiology and Pharmacology, Biochemistry and Molecular Biology, McCaig Institute for Bone and Joint Health (1)
Department of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, the Netherlands. (1)
State Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, No. 5 Dongdansantiao, Dongcheng District, Beijing, 100005 China (1)
Department of Hematopoiesis, Sanquin Research, Amsterdam, The Netherlands (1)
Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen DENMARK (1)
PROBE (1)
Principal Investigator and Associate Director – VIB-UGent Center for Medical Biotechnology, Belgium Head of Department – UGent Department of Biomolecular Medicine, Belgium (1)
1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada 2 Department of Molecular Genetics, University of Toronto, Toronto, ON M5S1A5, Canada (1)
School of Biochemistry, University of Bristol (1)
Department of Biosciences and bioengineering, IIT Bombay, India, 400076 (1)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (1)
Head of TIssue Engineering Group at the Departmnet of Dentistry (1)
CHAMBERS FAMILY ENDOWED PROFESSOR FOR PEDIATRIC CANCER Stanford Pediatric Hematology and Oncology 750 Welch Rd Ste 224 MC 5798 Palo Alto CA 94304 (1)
Turku Bioscience, University of Turku and Åbo Akademi University (1)
Department of Hematology, Erasmus MC, Rotterdam, the Netherlands (1)
Department of Hepatobiliary Surgery, Xijing Hospital, Fourth Military Medical University, Xi’an, Shaanxi (1)
Nanyang Technological Univeristy (1)
Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada (1)

Keyword

Fludarabine (2)
Chediak - Higashi Syndrome (1)
Severe Combined Immune Deficiency (SCID) (1)
Combined Variable Immune Deficiency (CVID) syndrome (1)
Dyskeratosis Congenita (DC) (1)
Mucopolysaccharidoses (1)
Hunter syndrome (MPS II) (1)
Alpha mannosidosis (1)
Hematopoietic Stem Cell Transplant (HSCT) (1)
Congenital transfusion dependent anemias (1)
Globoid cell leukodystrophy (1)
Hereditary diffuse leukoencephalopathy with spheroids (HDLS) (1)
X-linked Hyper IgM (XHIM) syndrome (1)
Hydroxyurea (1)
Transplantation (1)
Hematopoietic Stem Cell Transplantation (1)
Omenn Syndrome (1)
Bare Lymphocyte Syndrome (BLS) (1)
Combined Immune Deficiency (CID) syndromes (1)
Wiskott-Aldrich Syndrome (1)
Leukocyte adhesion deficiency (1)
Chronic granulomatous disease (CGD) (1)
IPEX syndrome (1)
Autoimmune Lymphoproliferative Syndrome (ALPS) (1)
Hemophagocytic Lymphohistiocytosis (HLH) syndromes (1)
Lymphocyte Signaling defects (1)
Congenital Amegakaryocytic Thrombocytopenia (CAMT) (1)
Osteopetrosis (1)
Hurler syndrome (MPS I) (1)
Metachromatic leukodystrophy (MLD) (1)

Classification

bacteria (3)

Modification

Not available (1)

Study type

Transcription profiling by array (609)
RNA-seq of coding RNA (80)
Methylation profiling by array (47)
ChIP-seq (31)
Comparative genomic hybridization by array (12)
Unknown experiment type (11)
ChIP-chip by tiling array (7)
Other (7)
MicroRNA profiling by array (7)
Methylation profiling by high throughput sequencing (6)
Transcription profiling by tiling array (5)
RNA-seq of coding RNA from single cells (5)
Transcription profiling by SAGE (4)
ChIP-chip by array (4)
Genotyping by array (4)
Transcription profiling by RT-PCR (4)
ATAC-seq (4)
RNA-seq of non coding RNA (4)
Human - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Cell line - One-color microarray (2)
RNAi profiling by array (2)
Bisulfite-seq (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)
Baseline (1)
MicroRNA profiling by high-throughput sequencing (1)
Human - Methylation microarray (1)
One-color microarray (1)
Animal - Single-cell sequencing (1)

Release Date

2022 (639)
2021 (635)
2023 (586)
2025 (496)
2020 (483)
2024 (432)
2019 (414)
2018 (355)
2016 (335)
2015 (321)
2017 (315)
2014 (296)
2013 (234)
2012 (204)
2011 (165)
2010 (153)
2008 (89)
2009 (81)
2026 (55)
2007 (50)
2005 (21)
2006 (15)
2002 (7)
2004 (6)
2001 (2)
2000 (2)
1997 (2)
2003 (1)
1998 (1)

Location

China (2)
United States (2)

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The bile acid metabolome in umbilical cord blood and meconium of healthy newborns: Distinct characteristics and implications (Umbilical cord blood analysis)

OBJECTIVE: To characterize the bile acid (BA) metabolomic profile of umbilical cord blood (UCB) and meconium in healthy newborns.

METHODS: Fifteen healthy newborns, which born in the Obstetrics Department of the Affiliated Hospital of Southwest Medical Univ...

2024-11-28 | MTBLS10266 | MetaboLights

Umbilical cord blood metabolome differs in relation to delivery mode, birth order and sex, maternal diet and possibly future allergy development in rural children

Allergy is one of the most common diseases among young children yet all factors that affect development of allergy remain unclear. In a small cohort of 65 children living in the same rural area of south-west Sweden, we have previously found that maternal factors, including prenatal diet, affect chil...

2020-12-18 | MTBLS2017 | MetaboLights

A multi-omic analysis of birthweight in newborn cord blood reveals new underlying mechanisms related to cholesterol metabolism

BACKGROUND: Birthweight reflects in utero exposures and later health evolution. Despite existing studies employing high-dimensional molecular measurements, the understanding of underlying mechanisms of birthweight remains limited.

METHODS: To investigate th...

2020-06-19 | MTBLS1684 | MetaboLights

The bile acid metabolome in umbilical cord blood and meconium of healthy newborns: Distinct characteristics and implications (Meconium analysis)

OBJECTIVE: To characterize the bile acid (BA) metabolomic profile of umbilical cord blood (UCB) and meconium in healthy newborns.

METHODS: Fifteen healthy newborns, which born in the Obstetrics Department of the Affiliated Hospital of Southwest Medical Univ...

2024-11-28 | MTBLS10267 | MetaboLights

Targeting transcription factor pu.1 for improving neurologic outcomes after spinal cord injury

Background: After spinal cord injury (SCI), lipid metabolism dysregulation at the lesion site exacerbates secondary damage. The transcription factor pu.1 has been implicated as a negative regulator of multiple lipid metabolism-related genes and pathways. However, its role in post-SCI lipid metabo...

2024-08-08 | MTBLS10453 | MetaboLights

Metabolomics Profiling of NEST Cord Blood Plasma

Not available

ORGANISM(S): Homo sapiens

ST000364 | MetabolomicsWorkbench

Human umbilical cord-derived mesenchymal stem cells ameliorate perioperative neurocognitive disorder by inhibiting inflammatory responses and activating BDNF/TrkB/CREB signaling pathway in aged mice

BACKGROUND: Perioperative neurocognitive disorder (PND) is a key complication affecting older individuals after anesthesia and surgery. Failure to translate multiple pharmacological therapies for PND from preclinical studies to clinical settings has necessitated the exploration o...

2023-07-25 | MTBLS7759 | MetaboLights

Gene expression profile of mesenchymal stem cells from paired umbilical cord units: cord is different from blood

Mesenchymal stem cells (MSC) are multipotent cells which can be obtained from several adult and fetal tissues including human umbilical cord units. We have recently shown that umbilical cord tissue (UC) is richer in MSC than umbilical cord blood (UCB) but their origin and characteristics in blood a...

ORGANISM(S): Homo sapiens

2009-09-18 | E-GEOD-18134 | biostudies-arrayexpress

Transcriptome data of CD34+ human cord blood-derived cell treated with UM171, SR1 or both

mRNA profiling of CD34+ human cord blood-derived cell treated with UM171, SR1 or both mRNA profiles of CD34+ human cord blood-derived cell treated with DMSO (control), SR1 [500nM], UM171 [35nM] or combination SR1 [500nM]+ UM171 [35nM] for 30min, 3hr, 12hr, 24hr, 48hr, 72hr were generated by deep s...

ORGANISM(S): Homo sapiens

2014-10-21 | E-GEOD-57299 | biostudies-arrayexpress

Transcription profiling of human differentiating cord blood derived megakaryocytes

Ex vivo differentiation of megakaryocytes (Mk) was carried out using human cord blood (CB) CD34+ cells under the stimulation of recombinant human interleukin-3, stem cell factor, and thrombopoietin for 7 days, followed by thrombopoietin treatment alone for further 3 days. Total cellular RNA was extr...

ORGANISM(S): Homo sapiens

2009-03-25 | E-MEXP-1546 | biostudies-arrayexpress

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