Crispr interference

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Organisms

Homo sapiens (245)
Mus musculus (31)
Escherichia coli (6)
Danio rerio (3)
synthetic construct (3)
Saccharolobus islandicus REY15A (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (2)
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2016 (12)
2018 (11)
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2014 (3)
2013 (2)

Metabolite Name

Acetyl-CoA_HMDB0001206 (1)
FAD_HMDB0001248 (1)
Coenzyme A_HMDB0001423 (1)
NADP_HMDB0000217 (1)
Stachyose_HMDB0003553 (1)
NADH_HMDB0001487 (1)
NAD_HMDB0000902 (1)
Uridine diphosphate-N-acetylglucosamine_HMDB0000290 (1)
Guanosine diphosphate mannose_HMDB0001163 (1)
Uridine diphosphate glucose_HMDB0000286 (1)
Taurocholic acid_HMDB0000036 (1)
Adenosine triphosphate_HMDB0000538 (1)
Raffinose_HMDB0003213 (1)
Taurodeoxycholic acid_HMDB0000896 (1)
Deoxycholic acid glycine conjugate_HMDB0000631 (1)
Adenosine diphosphate_HMDB0001341 (1)
Sucrose 6-Phosphate_No HMDB data (1)
Cholic acid_HMDB0000619 (1)
3-Oxocholic acid_HMDB0000502 (1)
Uridine 5'-diphosphate_HMDB0000295 (1)
Deoxycholic acid_HMDB0000626 (1)
S-Adenosylhomocysteine_HMDB0000939 (1)
Guanosine monophosphate_HMDB0001397 (1)
Maltitol_HMDB0002928 (1)
Trehalose_HMDB0000975 (1)
Deoxyadenosine monophosphate_HMDB0000905 (1)
Cyclic AMP_HMDB0000058 (1)
Cytidine monophosphate_HMDB0000095 (1)
Nonadecanoic acid_HMDB0000772 (1)
5'-Methylthioadenosine_HMDB0001173 (1)

First Public Date

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2015 (1)
2014 (1)
2013 (1)

Classification

bacteria (24)

Study type

RNA-seq of coding RNA (10)
Transcription profiling by array (5)
Other (2)
ChIP-seq (2)
Cell line - High-throughput sequencing (1)
4C (1)
DNA-seq (1)
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Release Date

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2019 (84)
2017 (65)
2018 (56)
2016 (40)
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2015 (25)
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2013 (17)
2012 (9)
2011 (4)
2010 (4)
2009 (2)
2007 (1)
2006 (1)

Lab affiliation

Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (19)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (8)
Department of Microbiology and Immunology, University of Melbourne, Victoria, Australia (2)
Institute for Biochemistry and Molecular Biology, Medical Faculty, University of Bonn, 53115 Bonn, Germany (2)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (2)
Winter Lab, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria (2)
1. St. Anna Children’s Cancer Research Institute (CCRI), Vienna, Austria 2. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria 3. Ludwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, Austria 4. Medical University of Vienna, Department of Pediatrics and Adolescent Medicine, Vienna, Austria 5. St. Anna Children’s Hospital, Medical University of Vienna, Department of Pediatrics and Adolescent Medicine, Vienna, Austria (1)
Assistant Professor of Genetics Genetics Department University of Pennsylvania 5050 Colket Translational Research Building 3501 Civic Center Boulevard Philadelphia, PA 19104 (1)
Cedars-Sinai Medical Center (1)
Center for Alzheimer's and Related Dementias (CARD), NIA and NINDS, NIH, Bethesda, Maryland, USA. (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
Debora Bonenfant, Novartis Institutes for Biomedical Research, Basel, Switzerland (1)
Debora Bonenfant, Novartis Institutes for Biomedical research, Basel, Switzerland (1)
Department of Basic and Clinical Neuroscience, The Maurice Wohl Clinical Neuroscience Institute, Institute of Psychiatry, Psychology, & Neuroscience, King’s College London, London, UK (1)
Department of Biochemistry (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland (1)
Department of Cellular and Molecular Pharmacology, QUantitative Bioscience Institute, University of California, San Francisco (1)
Department of Chemical Physiology and Biochemistry Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-334, Portland, OR, 97239, USA (1)
Department of Laboratory Medicine, University of California, San Francisco, USA (1)
Department of Medical Microbiology and Immunology, the University of California Davis Schoolof Medicine, 1275 Health Sciences Drive, Tupper Hall 3134, Davis, CA 95616, USA. Tel: 530-754-3074 (1)
Department of Pharmacology, Yale University School of Medicine, New Haven, CT 06520, USA (1)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (1)
Director, Duke Molecular Physiology Institute, Professor Departments of Medicine (Division of Endocrinology, Metabolism, and Nutrition) and Pharmacology & Cancer Biology Duke University Medical Center (1)
Dr Georg E. Winter, Winter Lab, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria (1)
Erasmus University Medical center (1)
Functional Proteomics Institute of Cancer Research (1)
Functional Proteomics, ICR (1)
Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA 94158, USA Department of Medicine and Division of Hematology/Oncology, University of California, San Francisco, San Francisco, CA 94158, USA (1)
Institute of Science and Technology, Austria, Klosterneuburg. (1)
Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Spain (1)

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Validating the use of CRISPR interference for the modulation of glycosylation in Burkholderia thailandensis

To determine whether CRISPR interference can be used to modulate glycosylation in Burkholderia thailandensis

ORGANISM(S): Burkholderia thailandensis E264

2023-03-20 | PXD036623 | Pride

Validating the use of CRISPR interference for the modulation of glycosylation in Burkholderia cenocepacia

To determine whether CRISPR interference can be used to modulation glycosylation in Burkholderia cenocepacia

ORGANISM(S): Burkholderia cenocepacia K56-2Valvano

2023-03-20 | PXD036564 | Pride

Glycosylation Burkholderia cenocepacia Crispr interference Crispri

Validating the use of CRISPR interference for the modulation of glycosylation in Burkholderia multivorans

To determine whether CRISPR interference can be used to modulation glycosylation in Burkholderia multivorans

ORGANISM(S): Burkholderia multivorans ATCC 17616

2023-03-20 | PXD036619 | Pride

Glycosylation Crispr interference Burkholderia multivorans Crispri

Validating the use of CRISPR interference for the modulation of glycosylation in Burkholderia diffusa

To determine whether CRISPR interference can be used to silence the expression of pglL in Burkholderia diffusa and therefore modulate glycosylation

ORGANISM(S): Burkholderia diffusa

2023-03-20 | PXD036585 | Pride

Glycosylation Burkholderia diffusa Crispr interference Crispri

Analysing the effects of glycosylation knockdown via CRISPR interference in Burkholderia diffusa

To determine the affect of CRISPR interference-mediated silencing of glycosylation in Burkholderia diffusa harbouring a pglL (WL85_RS02125)-targeted guide, and a nontarget guide using Data Independent Acquisition

ORGANISM(S): Burkholderia diffusa

2023-03-20 | PXD037556 | Pride

Glycosylation Burkholderia diffusa Dia Crispr interference Crispri

Validating the use of CRISPR interference for the modulation of glycosylation in Burkholderia cenocepacia - induction levels

To determine a suitable level of rhamnose required for the effective silencing of pglL and glycosylation using CRISPR interference in Burkholderia cenocepacia

ORGANISM(S): Burkholderia cenocepacia K56-2Valvano

2023-03-20 | PXD036568 | Pride

Glycosylation Burkholderia cenocepacia Crispr interference Crispri

Structure of the minimal type I-F2 CRISPR-Cas DNA-interference complex

CRISPR–Cas systems provide adaptive immunity in prokaryotes by targeting and degrading invasive genetic elements. Among them, the type I-F2 system represents the most compact type I CRISPR–Cas system, distinguished by the absence of small and large subunits. These subunits are otherwise essential fo...

ORGANISM(S): Shewanella putrefaciens CN-32

2026-03-09 | PXD068253 | Pride

Cryo-em Shewanella putrefaciens Hdx-ms Dna interference Interference complex

Analysing the effects of glycosylation knockdown via CRISPR interference in Burkholderia thailandensis

To determine the effect of CRISPR interference-mediated silencing of glycosylation in Burkholderia thailandensis harbouring a pglL-targeted guide, and a nontarget guide using Data Independent Acquisition

ORGANISM(S): Burkholderia thailandensis E264

2023-03-20 | PXD037595 | Pride

Glycosylation Burkholderia thailandensis Dia Burkholderia pseudomallei complex Crispr interference Crispri

ii. Analysing the effects of glycosylation knockdown via CRISPR interference in Burkholderia multivorans

To determine the effect of CRISPR interference-mediated silencing of glycosylation in Burkholderia multivorans harbouring a pglL-targeted guide, and a nontarget guide using Data Independent Acquisition

ORGANISM(S): Burkholderia multivorans ATCC 17616

2023-03-20 | PXD037585 | Pride

Glycosylation Burkholderia multivorans Crispr interference Burkholderia cepacia complex Crispri Dia

IV CRISPR-Cas system displays PAM-dependent interference to vectors

IV CRISPR-Cas system displays PAM-dependent interference to vectors without showing nuclease activity to the target

PRJEB48544 | ENA

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