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MetabolomicsLegume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification

Biological nitrogen fixation by free-living bacteria and rhizobial symbiosis with legumes plays a key role in sustainable crop production. Here, we study how different crop combinations influence the interaction between peanut plants and their rhizosphere microbiota via metabolite deposition and ...

2024-03-19 | MTBLS6537 | MetaboLights
MetabolomicsTranscriptomic dynamics control rapid transition of core crop functions in 'lactating' pigeon

Pigeons (Columba livia) are widely kept as domesticated pets worldwide, and may have adapted to captivity through the evolutionarily specialized ability to produce ‘milk’ in the crops of both male and female parents via rapid proliferation and shedding of lipid- and protein-enriched epithelial ce...

2023-02-13 | MTBLS5195 | MetaboLights
TranscriptomicsA transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production
Comparative transcriptional profiling of N. crassa grown on five major crop straws of China (barley, corn, rice, soybean and wheat straws) revealed a highly overlapping group of 430 genes, the Biomass commonly Induced Core Set (BICS). A large proportion of induced carbohydrate-active-enzyme (CAZy) g...
ORGANISM(S): Neurospora crassa OR74A 
2015-01-21 | E-GEOD-60986 | biostudies-arrayexpress
MetabolomicsReducing the use of chemical fertilizers and improving crop salt stress tolerance by acetoin and 2,3-butanediol produced by Bacillus subtilis

Small volatile molecules are considered to play a role in promoting plant growth, with acetoin and 2,3-butanediol being representative examples. In this study, we employed metabolic engineering of Bacillus subtilis to enhance the production of acetoin and 2,3-butanediol, and investigated the...

2025-10-16 | MTBLS13110 | MetaboLights
TranscriptomicsCrop transcriptome profiling at different 'lactation' time points
Crop transcriptome profiling at different 'lactation' time points
ORGANISM(S): Columba livia 
2012-11-01 | E-MTAB-1317 | biostudies-arrayexpress
TranscriptomicsCrop transcriptome profiling at different 'lactation' time points
Crop transcriptome profiling at different 'lactation' time points
ORGANISM(S): Columba livia 
2012-11-01 | E-MTAB-1318 | biostudies-arrayexpress
TranscriptomicsGenome dissection in the polyploid crop oilseed rape by transcriptome sequencing
Many crop species have polyploid genomes that are unlikely to be sequenced to a high standard in the near future, representing a barrier to genomics-based breeding. As an exemplar, we sequenced the leaf transcriptome to analyse both sequence variation1 and transcript abundance across a mapping popul...
ORGANISM(S): Brassica napus 
2011-06-23 | E-MTAB-4284 | biostudies-arrayexpress
ProteomicsLarge scale proteomics in crops: Solanum lycopersicum LC-MSMS
Plants represent the nutritional basis of virtually all life on earth and protein-rich foods from crop plants are a global megatrend essential for sustaining an increasing human population and counteracting climate change. While the genomes of crops are increasingly elucidated, little is known about...
ORGANISM(S): Solanum lycopersicum 
2023-02-07 | PXD038945 | Pride
Lc-msms Crop Solanum lycopersicum Tomato 
ProteomicsRhizosphere bacterial community in re-used cover crop root channels initiate responses against drought
Plant growth and development depends on the availability of nutrients and water resources in the soil. The increased frequencies of drought events over recent years have affected nutrient availability soil systems. Crops reutilising winter cover crop root channels allows access to resources from dis...
ORGANISM(S): soil metagenome 
2025-09-22 | PXD062138 | Pride
Cover crop  root channel re-use  bacterial community  drought  soil types  metaproteomics 
GenomicsUK Crop Microbiome CryoBank
UK Crop Microbiome CryoBank
PRJEB58189 | ENA
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